PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_013905636.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Protein Properties

Length: 191aa MW: 20126.5 Da PI: 4.7521

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013905636.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	43	9.6e-14	7	83	22	97
NF-YC 22 Pl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 Pl arik++++ad++v +i+ +P l+ +a elf+ +l r+ a++ +t+ s ++ +v++ + dfl d XP_013905636.1 7 PLaARIKRVMQADDEVGKIAQATPFLMERALELFLQHLCERASDVAQQRGAKTVTPSHLKHVVNSDQLLDFLKDALA 83 5527**********************************************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-23	10	82	IPR009072	Histone-fold
SuperFamily	SSF47113	4.02E-20	10	83	IPR009072	Histone-fold
Pfam	PF00808	7.1E-18	10	69	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MGKKPHPLAA RIKRVMQADD EVGKIAQATP FLMERALELF LQHLCERASD VAQQRGAKTV 60 TPSHLKHVVN SDQLLDFLKD ALASAADLAE GVSEAPKPKR QRAEKKEPRE PKAAKTGREA 120 AEGAGTGAEG DALQESVADV TAAEAARIAS GPSPFALADA QAGAPVGELL AAEALATYGG 180 AQEQEYDDDY D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	8e-18	10	69	15	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	101	KPKRQR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013905636.1	1e-133	Dr1-associated corepressor
TrEMBL	A0A0D2N2G8	1e-132	A0A0D2N2G8_9CHLO; Dr1-associated corepressor
STRING	XP_005652243.1	3e-29	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3343	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-20	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Entrez Gene	25730803

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]