PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013905703.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family Whirly
Protein Properties Length: 132aa    MW: 14211 Da    PI: 7.6708
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013905703.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly89.83.1e-28312911136
          Whirly  11 vkavrptfeald..sgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpa.akgsneGkvrkalkvePlpdG 102
                     vk  +pt++  +  +g ++++r G +lle+a a +er+y W++k s+a+sate++++    +++  +f+hdp  ++ s +G v kal+    pdG
  XP_013905703.1   3 VKFLKPTWVPANspGGGFTMDRVGKVLLEFAAASGERQYSWDNKISLAMSATELGQIFA-DPNQEHSFYHDPNiMDASSRGAVSKALRWSLAPDG 96 
                     556666666544116899*************************************9875.789999******999******************** PP

          Whirly 103 sGlfvnlsvtnslvkgnesfsvPvskaefavlrs 136
                       +f++ s+  +   ++ +++vP+++ae+ v+ s
  XP_013905703.1  97 KAYFISASIGGT-SATKANITVPLTRAEYYVFES 129
                     ********9877.789999*********998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF085362.8E-291130IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.106.1E-271130IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544478.63E-1618129IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0005739Cellular Componentmitochondrion
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MAVKFLKPTW VPANSPGGGF TMDRVGKVLL EFAAASGERQ YSWDNKISLA MSATELGQIF  60
ADPNQEHSFY HDPNIMDASS RGAVSKALRW SLAPDGKAYF ISASIGGTSA TKANITVPLT  120
RAEYYVFESV GA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A5e-18112951178p24: plant transcriptional regulator PBF-2
1l3a_B5e-18112951178p24: plant transcriptional regulator PBF-2
1l3a_C5e-18112951178p24: plant transcriptional regulator PBF-2
1l3a_D5e-18112951178p24: plant transcriptional regulator PBF-2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013905703.13e-94transcription factor
TrEMBLA0A0D2LK057e-93A0A0D2LK05_9CHLO; Transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-19WHIRLY 2
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]