PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_013905705.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Protein Properties

Length: 294aa MW: 32060.8 Da PI: 5.7141

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013905705.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	231	255	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C+k +s+ ++L++H+++ H XP_013905705.1 231 FYCQTCSKQYSNAMELEQHLSSydH 255 79*****************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	1.8E-12	87	134	IPR000467	G-patch domain
PROSITE profile	PS50174	15.571	89	136	IPR000467	G-patch domain
Pfam	PF01585	3.0E-12	90	127	IPR000467	G-patch domain
SuperFamily	SSF57667	2.51E-6	229	266	No hit	No description
PROSITE profile	PS50157	9.494	231	260	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.7E-5	231	257	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	233	255	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MSGAWQPMVV DAKLAAPRGM VASAGAMKRD SGSDSDGGGG GDKGPAMDVG GDVMSLAEEE 60 GRGLGWYPGA DGEDGDGAAV ASVSTAIGSG NKGYQLLQKM GWAAGKGLGR NEDGILEPVA 120 SGVEAGVRLG LGKQAQDDHF TNPELISRRL LESEIQANEG EDRRQRREYV LLLLLLLLLL 180 LLLLLLLLLL LLLLLVVVVV MVVVVLVVVV VLQVERDERI KADVSEILRT FYCQTCSKQY 240 SNAMELEQHL SSYDHHHKKR LAESRALMAE RTRDERQRKE QRRQEKEAAK LHQQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013905705.1	0.0	hypothetical protein MNEG_1263
TrEMBL	A0A0D2NQW0	0.0	A0A0D2NQW0_9CHLO; Uncharacterized protein
STRING	XP_005644175.1	3e-57	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5642	6	6

Link Out ? help Back to Top
Entrez Gene	25730011

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]