PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013906195.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

AP2

Protein Properties

Length: 1232aa MW: 117691 Da PI: 4.7768

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013906195.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.1	8.9e-13	17	62	5	55
AP2 5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 GV+wdkk+ rW+++ g ++k++ lg+f+ta++Aaka+++ +l+g XP_013906195.1 17 GVFWDKKTRRWRCQ---L---GyQSKKIFLGYFDTAQDAAKAYDRKLVELRG 62 9***********...4...5567*******************999998 PP
2	AP2	41.6	3.2e-13	511	558	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV+wdkk+ rW++++ + +k++ lg+f a eAa+a++a +l+g XP_013906195.1 511 FRGVFWDKKSRRWRCQLGHK-----NKKIFLGYFNDAAEAARAYDAKLVELNG 558 8*************8884.....7******************9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	11.719	14	70	IPR001471	AP2/ERF domain
Pfam	PF00847	1.9E-6	17	62	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.17E-12	17	71	IPR016177	DNA-binding domain
SMART	SM00380	1.2E-4	17	76	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.5E-11	22	70	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.7E-13	510	567	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	13.643	510	566	IPR001471	AP2/ERF domain
SMART	SM00380	3.1E-7	510	572	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-6	511	553	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.49E-13	511	567	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1232 aa Download sequence Send to blast
MIQASRTDPG VADPPGGVFW DKKTRRWRCQ LGYQSKKIFL GYFDTAQDAA KAYDRKLVEL 60 RGASARTNYP ITEYLQLLNA APIGGPAPGP AAASPHPSGA SLLHSLDGLD DGGGGSSMGG 120 AAASSGGGAP ASGSYADHLA MHQDLGGVSI GMGGGAASAQ LLQQHLLSTL TGSGGGAGSA 180 SAGNVGGGNG GGGAGGGGGE NSLHNQLLRR LDDAAGVLGA ISGSGSDPGR EISSSFGGAC 240 GTGLGAASAA MVMAAGLGGG GLMGGLDGGG FDLSSAGLAG LGGGGGGGAA PSSMVGQLME 300 ELAAAEQARR AQQQQLDAAV AAVQQQQQQH QQQQHQQQQQ QAGYGGMDHD GGCGELTQHH 360 VGGGDDHGGA GGTPVSLEQA TAALVAAGGG AAPPGGAGGF GSLLDAFSSG DDPYGAVAAA 420 AAAAGYGGGG GLGGGLGAYS SALALDPFGG LGSMPVSMPL PALDPPPAPS PPAAAAAPAR 480 AASGGGLRTK AARGGGGGGG GGGDGAEAHS FRGVFWDKKS RRWRCQLGHK NKKIFLGYFN 540 DAAEAARAYD AKLVELNGAN AKTNFPLHDY LVPTNNSTRG TSGSMEAVQL AQRPVPLRSG 600 SGAGGGGGGG ARHGYGDLGG GRADTWGTGD PAEDAAAGDD AAAKRRRLNG GAGDGPLLFG 660 PSLLAGDNVL AASLGFGGGL SGLDGGGAGL DGGGMGLGAA RAGSGGHRLV ETGPGLLGSG 720 LSRGPSGAPL PPAPLNGGGT AGAAARGLLP PLAPGGAGGL AAYGGGALGG GGGGAGGGNL 780 DRMASSEALS ALPASGVDGH YSMQDLSPQT AAVAATGRVG YGGGLPGGAW GAPGGSGYGG 840 GGGLLGALGG GGALGLPPLG LGASNGVGGG ALGGDALSHL GGVLRGLGDG GGGGGQQQLP 900 PVAPLSTGGM DEQTEAALLA RVLGLGAPGG FGAPTPSAGA AGGGGGLYGQ GGAPGYAGLG 960 SALQQQQPSA ARPAAPPGGL AGLGADAAGL TGDDVHQVLQ SLFGEDIARE LATPPAPLQA 1020 APPPRAVAAE PAHALAEALA GSAEREQQQM QQQQQLHQQQ LHQQQLQQQQ QQLEQAALEQ 1080 QQQQQQQQAL FEQQQQQQQQ QQQQQQQQQQ QQQQQQAEND EKNVAPVGAA GPPPEAAPVP 1140 YAGAETGTPH APAVAADAAE GELASGLAGA SAAVEPPPPE PAAPAAAPHA AGEEPGSGGS 1200 VAAEEAPAPP KVPQDAPAAL MEVPADGVQA AA

Sequence ? help Back to Top

Protein Sequence Length: 1232 aa Download sequence Send to blast

MIQASRTDPG VADPPGGVFW DKKTRRWRCQ LGYQSKKIFL GYFDTAQDAA KAYDRKLVEL  60
RGASARTNYP ITEYLQLLNA APIGGPAPGP AAASPHPSGA SLLHSLDGLD DGGGGSSMGG  120
AAASSGGGAP ASGSYADHLA MHQDLGGVSI GMGGGAASAQ LLQQHLLSTL TGSGGGAGSA  180
SAGNVGGGNG GGGAGGGGGE NSLHNQLLRR LDDAAGVLGA ISGSGSDPGR EISSSFGGAC  240
GTGLGAASAA MVMAAGLGGG GLMGGLDGGG FDLSSAGLAG LGGGGGGGAA PSSMVGQLME  300
ELAAAEQARR AQQQQLDAAV AAVQQQQQQH QQQQHQQQQQ QAGYGGMDHD GGCGELTQHH  360
VGGGDDHGGA GGTPVSLEQA TAALVAAGGG AAPPGGAGGF GSLLDAFSSG DDPYGAVAAA  420
AAAAGYGGGG GLGGGLGAYS SALALDPFGG LGSMPVSMPL PALDPPPAPS PPAAAAAPAR  480
AASGGGLRTK AARGGGGGGG GGGDGAEAHS FRGVFWDKKS RRWRCQLGHK NKKIFLGYFN  540
DAAEAARAYD AKLVELNGAN AKTNFPLHDY LVPTNNSTRG TSGSMEAVQL AQRPVPLRSG  600
SGAGGGGGGG ARHGYGDLGG GRADTWGTGD PAEDAAAGDD AAAKRRRLNG GAGDGPLLFG  660
PSLLAGDNVL AASLGFGGGL SGLDGGGAGL DGGGMGLGAA RAGSGGHRLV ETGPGLLGSG  720
LSRGPSGAPL PPAPLNGGGT AGAAARGLLP PLAPGGAGGL AAYGGGALGG GGGGAGGGNL  780
DRMASSEALS ALPASGVDGH YSMQDLSPQT AAVAATGRVG YGGGLPGGAW GAPGGSGYGG  840
GGGLLGALGG GGALGLPPLG LGASNGVGGG ALGGDALSHL GGVLRGLGDG GGGGGQQQLP  900
PVAPLSTGGM DEQTEAALLA RVLGLGAPGG FGAPTPSAGA AGGGGGLYGQ GGAPGYAGLG  960
SALQQQQPSA ARPAAPPGGL AGLGADAAGL TGDDVHQVLQ SLFGEDIARE LATPPAPLQA  1020
APPPRAVAAE PAHALAEALA GSAEREQQQM QQQQQLHQQQ LHQQQLQQQQ QQLEQAALEQ  1080
QQQQQQQQAL FEQQQQQQQQ QQQQQQQQQQ QQQQQQAEND EKNVAPVGAA GPPPEAAPVP  1140
YAGAETGTPH APAVAADAAE GELASGLAGA SAAVEPPPPE PAAPAAAPHA AGEEPGSGGS  1200
VAAEEAPAPP KVPQDAPAAL MEVPADGVQA AA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	643	647	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013906195.1	0.0	hypothetical protein MNEG_0771
TrEMBL	A0A0D2NSF2	0.0	A0A0D2NSF2_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3683	5	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28370.1	4e-08	ERF domain protein 11

Link Out ? help Back to Top
Entrez Gene	25726889

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]