PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013906279.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

C3H

Protein Properties

Length: 1202aa MW: 127184 Da PI: 9.9574

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013906279.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.5e-07	1177	1200	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 + + C+ff r+G+C+yG +Ck+aH XP_013906279.1 1177 GAKQCDFFWRNGWCRYGTNCKYAH 1200 5567******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.10.10	5.8E-4	439	525	IPR011989	Armadillo-like helical
SuperFamily	SSF90229	1.03E-5	1175	1201	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.216	1175	1202	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.8E-5	1177	1200	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-4	1179	1201	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1202 aa Download sequence Send to blast
MEVETEIEAP PPYEEDELGL QGLVLASDAN LRMLFCSGDE AAALLLAAHR LRQLSPELAL 60 EGSIEGAVVG CLNWDGSVAL RSVVAVERLD TTRDGAIDRD ATLLQLRPNE PSPVALSRLH 120 SKSGLAASAP GVWSAGVKAF QEAERAADAV RWESSGSGGV NRAGDDDGSV CCSGAYLGDR 180 ASCALVAFRL AKLALLQQPL AELSALMQQA GAGLEDVVPL LRLASCSSGP LGDSNPPGAG 240 FTLPQHGEVL RLAHKVSAAR CQAPIPEAMR ALLQQMQGPQ QALRIWRERE QRRRQDEERQ 300 QREEEEALQE LRMLEAEALD EGQARQPRVG HGPSSPRRER NPTLDTPHPK GPGTARPVTA 360 DGGAKASLQR SPAVPHTRDG RSNSSRGGEG ERSDNLQPEG GTRPGSSAGG ANPRDALDGR 420 QSRSLGVELR KADDHQGRGE LKERRRKAGP RAEEAPHPEE QQQEKRQERP QQQPQQQQQQ 480 QQQQQGRTEQ QSPSQNRNKQ DNRKKGLQPP ISSQQQEGRE DSRRDEGPPP SRSHAAAPVA 540 PPLPSGSLGE RRRPSLGGGG FPAGADASAD RSCLAELMIA LALASSTTPD VERLDASGAA 600 HCVGARVALA DLRQQLDPKV LAFAEREGAG GSAGGGGGKV SALAAFIRKR CPAVLLVWPE 660 SGAGGAPAAV EGAKAAAGAG AGTSDAAVKE AGPWAVLSRH WLSDLLKQRL FKRLVRNLQG 720 DVLAEALRRG VGVNAGEGMR RLAPAALLPY MQLYQNDVEF ARANFDPGAV VVMARPDVKA 780 VLLAPAECED KFRAGGLRVL ATRPDLPGLV SLGYWREQGA IGTEGCGHGA TRDGERIGSA 840 SGGGGKVDGH SPVPRSKRRR SRSRSRSREE PELGQKRGRS RSRGRSRGEQ ASGSKRGRSL 900 SRGRAEPALG SKRGRSRSRS RGEPALGRKR GRSLVRDDDD PDDRAGISRP NRNAQAAPAA 960 AAAGGDGRTQ ARAGPPTGSA PSMPDPDAVV LANIGWRRFG QPAASVSTMQ AAAQPPVRQP 1020 SGRERLFSPA GAPAEPSSPA PPSRQGSGNV FGRLRPLTGP PTEVGGAASS SEGHRAGAGP 1080 TLFVPAAHLQ GVLDETMVAM RGHMEVQQRP RIELSVLQCL VPAALLAEAK AQGLPLVDFL 1140 VRHLGDQLCL TLHGRDTWVE LLPGGAGPSG SSGTTYGAKQ CDFFWRNGWC RYGTNCKYAH 1200 AR

Sequence ? help Back to Top

Protein Sequence Length: 1202 aa Download sequence Send to blast

MEVETEIEAP PPYEEDELGL QGLVLASDAN LRMLFCSGDE AAALLLAAHR LRQLSPELAL  60
EGSIEGAVVG CLNWDGSVAL RSVVAVERLD TTRDGAIDRD ATLLQLRPNE PSPVALSRLH  120
SKSGLAASAP GVWSAGVKAF QEAERAADAV RWESSGSGGV NRAGDDDGSV CCSGAYLGDR  180
ASCALVAFRL AKLALLQQPL AELSALMQQA GAGLEDVVPL LRLASCSSGP LGDSNPPGAG  240
FTLPQHGEVL RLAHKVSAAR CQAPIPEAMR ALLQQMQGPQ QALRIWRERE QRRRQDEERQ  300
QREEEEALQE LRMLEAEALD EGQARQPRVG HGPSSPRRER NPTLDTPHPK GPGTARPVTA  360
DGGAKASLQR SPAVPHTRDG RSNSSRGGEG ERSDNLQPEG GTRPGSSAGG ANPRDALDGR  420
QSRSLGVELR KADDHQGRGE LKERRRKAGP RAEEAPHPEE QQQEKRQERP QQQPQQQQQQ  480
QQQQQGRTEQ QSPSQNRNKQ DNRKKGLQPP ISSQQQEGRE DSRRDEGPPP SRSHAAAPVA  540
PPLPSGSLGE RRRPSLGGGG FPAGADASAD RSCLAELMIA LALASSTTPD VERLDASGAA  600
HCVGARVALA DLRQQLDPKV LAFAEREGAG GSAGGGGGKV SALAAFIRKR CPAVLLVWPE  660
SGAGGAPAAV EGAKAAAGAG AGTSDAAVKE AGPWAVLSRH WLSDLLKQRL FKRLVRNLQG  720
DVLAEALRRG VGVNAGEGMR RLAPAALLPY MQLYQNDVEF ARANFDPGAV VVMARPDVKA  780
VLLAPAECED KFRAGGLRVL ATRPDLPGLV SLGYWREQGA IGTEGCGHGA TRDGERIGSA  840
SGGGGKVDGH SPVPRSKRRR SRSRSRSREE PELGQKRGRS RSRGRSRGEQ ASGSKRGRSL  900
SRGRAEPALG SKRGRSRSRS RGEPALGRKR GRSLVRDDDD PDDRAGISRP NRNAQAAPAA  960
AAAGGDGRTQ ARAGPPTGSA PSMPDPDAVV LANIGWRRFG QPAASVSTMQ AAAQPPVRQP  1020
SGRERLFSPA GAPAEPSSPA PPSRQGSGNV FGRLRPLTGP PTEVGGAASS SEGHRAGAGP  1080
TLFVPAAHLQ GVLDETMVAM RGHMEVQQRP RIELSVLQCL VPAALLAEAK AQGLPLVDFL  1140
VRHLGDQLCL TLHGRDTWVE LLPGGAGPSG SSGTTYGAKQ CDFFWRNGWC RYGTNCKYAH  1200
AR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	876	886	RGRSRSRGRSR
2	912	920	RGRSRSRSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013906279.1	0.0	hypothetical protein MNEG_0692
TrEMBL	A0A0D2MXQ3	0.0	A0A0D2MXQ3_9CHLO; Uncharacterized protein

Link Out ? help Back to Top
Entrez Gene	25726810

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]