PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013906330.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

C2H2

Protein Properties

Length: 543aa MW: 57596.6 Da PI: 10.2153

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013906330.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	339	358	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +Cp Cg+ ++ ++L+rH+ XP_013906330.1 339 RCPVCGQGSRSYDMLRRHMG 358 8*****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.494	338	366	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0049	338	361	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MPLHTALGIG RKPGSAGTEA SSVLAPCHVP RFISKPAVAA RAAAGSTATA ASAGRRIRGA 60 GYYERYLRNR RKRGGEFLDD DGVGIEGPAA PLPPGAWLPH LSDEPPPPGV SAAALAFGNA 120 AGGAVAAPGR WPAHAALLRG VVREAVAAYR LAPPPEVQRP RDAVDRLRDR VPEDQASGLL 180 AGLARADGLI IGPPNLQQQR NPDVQLPRLL RVEEACAHGE AVEVYAFWDV SSLHPRALDP 240 RVVVHRMRRV LAAAGEVRGL YAYCARRQLS WVPEAFMRLH APERLQGGPR ARVPSHQQQQ 300 QLQQQQPAEA AADLKSTADD GGGSSGGGEG ALEPAVKLRC PVCGQGSRSY DMLRRHMGQV 360 HKQRAPPLAE LERAMSAQLQ GPAPAKPPGA AQDVAAAEAI AAMWRGGLTN TGGRTLGKVA 420 AYTSSSGALF TPRPGLQISL RYVLAREGAD VRIVQNQREA VDESLTQGLA VLLDRLERRH 480 GNDVSTSHVV VAIASDSRAH APLLQRARQL GCSILAICNA QAHCPEADAL LRWRVLSAGR 540 YIV

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MPLHTALGIG RKPGSAGTEA SSVLAPCHVP RFISKPAVAA RAAAGSTATA ASAGRRIRGA  60
GYYERYLRNR RKRGGEFLDD DGVGIEGPAA PLPPGAWLPH LSDEPPPPGV SAAALAFGNA  120
AGGAVAAPGR WPAHAALLRG VVREAVAAYR LAPPPEVQRP RDAVDRLRDR VPEDQASGLL  180
AGLARADGLI IGPPNLQQQR NPDVQLPRLL RVEEACAHGE AVEVYAFWDV SSLHPRALDP  240
RVVVHRMRRV LAAAGEVRGL YAYCARRQLS WVPEAFMRLH APERLQGGPR ARVPSHQQQQ  300
QLQQQQPAEA AADLKSTADD GGGSSGGGEG ALEPAVKLRC PVCGQGSRSY DMLRRHMGQV  360
HKQRAPPLAE LERAMSAQLQ GPAPAKPPGA AQDVAAAEAI AAMWRGGLTN TGGRTLGKVA  420
AYTSSSGALF TPRPGLQISL RYVLAREGAD VRIVQNQREA VDESLTQGLA VLLDRLERRH  480
GNDVSTSHVV VAIASDSRAH APLLQRARQL GCSILAICNA QAHCPEADAL LRWRVLSAGR  540
YIV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013906330.1	0.0	hypothetical protein MNEG_0655
TrEMBL	A0A0D2NSX7	0.0	A0A0D2NSX7_9CHLO; Uncharacterized protein

Link Out ? help Back to Top
Entrez Gene	25726773

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]