PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013906421.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 181aa    MW: 19029.4 Da    PI: 9.2102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013906421.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-112572555
             AP2  5 GVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    GV+wd k + W+A+I+d      +  k+ ++g+f  +e+Aa+a++ a++ l g
  XP_013906421.1 25 GVTWDDKEKTWRARIYDR-----NagKQRHIGRFPAEEDAAQAYDCAALLLLG 72
                    9*************9993.....235*********************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.8762284IPR001471AP2/ERF domain
SMARTSM003806.5E-42590IPR001471AP2/ERF domain
PfamPF008471.3E-52569IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-102576IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-93283IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MDVEIPEGDK DSHGGAAGGP EAQGGVTWDD KEKTWRARIY DRNAGKQRHI GRFPAEEDAA  60
QAYDCAALLL LGPSYATQDK LNFGVERAER LLPVFEAQPV FSRLRGPRPG APGGAAPVPS  120
LGVRKRVTKA RAAAATMASA TAAAIAAEEL ERAMAVIQRQ VGWDGGGRAP CRPGATSRAA  180
V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013906421.11e-127hypothetical protein MNEG_0538
TrEMBLA0A0D2N5151e-126A0A0D2N515_9CHLO; Uncharacterized protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]