PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015865646.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 324aa    MW: 36742 Da    PI: 6.6986
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015865646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l d+++ +G g W+  +++ g++R++k+c++rw++yl
   XP_015865646.1 14 RGAWTAMEDKILTDYIRIYGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding50.16.4e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++
   XP_015865646.1  67 RGNISRDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      788999****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.45961IPR017930Myb domain
SuperFamilySSF466892.18E-2712108IPR009057Homeodomain-like
SMARTSM007173.0E-131363IPR001005SANT/Myb domain
PfamPF002497.7E-141461IPR001005SANT/Myb domain
CDDcd001671.61E-101661No hitNo description
PROSITE profilePS5129424.79762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2365116IPR009057Homeodomain-like
SMARTSM007175.4E-1566114IPR001005SANT/Myb domain
PfamPF002495.7E-1467110IPR001005SANT/Myb domain
CDDcd001671.23E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAM EDKILTDYIR IYGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SRDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKIKGNN  120
SSSTTCRNEK AKISPQTLRH STIQPSKGSN SINSHVVRTR ASRCTKAVLV PHHFPKLNQI  180
DNHDHDDTTG KLAPVFPPPC VVIDQANHDQ GVVDLQPSSL ALLSDENNSS EFMMDFELDE  240
NFLSDFPSNI DFLHLTYNLD NGGEDDNNID IATTSSEFET GQSSSPKSDH HQNLLFSQDH  300
MLYEVDLEST TSVVDPHVFD WLQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015865646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272133e-89AB627213.1 Malus x domestica mRNA, microsatellite: MEST039, clone: FRT01_18_F07.
GenBankDQ0744633e-89DQ074463.1 Malus x domestica MYB11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865646.10.0myb-related protein Zm38-like
TrEMBLA0A251PV211e-100A0A251PV21_PRUPE; Uncharacterized protein
STRINGXP_008228205.11e-100(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.16e-59myb domain protein 3