PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015865766.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TCP
Protein Properties Length: 590aa    MW: 61784.2 Da    PI: 7.9232
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015865766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.22.9e-381822853112
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 
                     + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG ++d++tieWLlqqa pai+++tgt++++a+++  + s +ss+s+ s++       +
  XP_015865766.1 182 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGNKSDGETIEWLLQQAGPAIIAATGTGTIPANFStLNISLRSSGSTLSAP-------P 269
                     5699****************************************************************9997777777777743333.......4 PP

             TCP  97 skksqksaasalnlak 112
                     sk++++s + +l+la+
  XP_015865766.1 270 SKSAPHSFHGTLALAH 285
                     4444444444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-37186387IPR005333Transcription factor, TCP
PROSITE profilePS5136926.568187241IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MDLADLQTNN SNNNNNNKQS GNTNTPHHHH PHHHQQQKQS SSSSSQFVVP FDGRSSAGGG  60
PSSQGGPPFM GSISIQAGLT TTHHHAHAHP HAHAASSTPA TAPSSSSSSS SSSSSSSSSS  120
STSASTAPPH LVDASLAIAT RSDAHPSTRP APLLDSSKKN QQQQQQQLSI SPTGAAAASN  180
PPVKRSTKDR HTKVDGRGRR IRMPATCAAR VFQLTRELGN KSDGETIEWL LQQAGPAIIA  240
ATGTGTIPAN FSTLNISLRS SGSTLSAPPS KSAPHSFHGT LALAHHPHYD EGFAHAGLLG  300
FHQHQPPLMT ADQIAEVLPS GGGDGGGGES TTDNYMRKRF REDLFKEESQ GQAEASAGGG  360
GGSPSSNKAF KSGLQLPKQQ QQQQQQQQQQ EAAAGGASSG LLRPSNIMPA TAMWAVTPAP  420
TSGAGSTFWM LPVTAGAGGP STVGAGTSGA GPSEQPHMWT FPTTPASSHG NTLQAPLHFM  480
PRFNLPHHTG NLEFQGGRGG NHPLQLGSML MQQQQQQQQQ PSQQLGLGVS ESNLGMLAAL  540
NAYSRGGLNI NSDHHQNHPL EHHHHQHQQQ QQQQQPQTTD SGDEDPNSSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015865766.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024923981.10.0transcription factor TCP8-like
RefseqXP_024923982.10.0transcription factor TCP8-like
RefseqXP_024923983.10.0transcription factor TCP8-like
RefseqXP_024923984.10.0transcription factor TCP8-like
RefseqXP_024923985.10.0transcription factor TCP8-like
TrEMBLA0A2P5BJ320.0A0A2P5BJ32_PARAD; TCP transcription factor
STRINGEOX971600.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.16e-53TCP family protein