PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015865811.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Nin-like

Protein Properties

Length: 196aa MW: 22777.2 Da PI: 9.0226

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015865811.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.2	5.2e-26	87	135	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++l+d++k+F+ pi++AAkeL+v+lTvLK++CR+++I+RWPhRkiksl XP_015865811.1 87 GLELNDIQKHFDVPITKAAKELKVGLTVLKKRCRELNIMRWPHRKIKSL 135 6899*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.768	67	156	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-23	88	135	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MHNNIPCIEF HNFEDLSTSG FFLDNVAHSS QCEDVMVDEK PQTNMMNSFT HLENLTHEKR 60 GLPSLNDNTE EEKRSNNGDD HRKKCAGLEL NDIQKHFDVP ITKAAKELKV GLTVLKKRCR 120 ELNIMRWPHR KIKSLKSLIN SVKEMGLADE IMMLEEHKRL LEVLPDTELT KKTKKLRQAC 180 FKANYKKRRS LQLAHA

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015865811.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015865811.1	1e-144	protein RKD4-like
Swissprot	Q9LVU8	4e-42	RKD4_ARATH; Protein RKD4
TrEMBL	A0A2P5E6T3	1e-69	A0A2P5E6T3_TREOI; RWP-RK domain containing protein
STRING	EOY23580	1e-62	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-44	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]