PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015865962.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YA
Protein Properties Length: 340aa    MW: 36849 Da    PI: 9.0926
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015865962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1011.2e-31181237158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep+YVN+KQy++Il+RRq Rakle+++kl +k+rkpylheSRh hAl+R+RgsgGrF
  XP_015865962.1 181 DEPIYVNSKQYRAILRRRQYRAKLEAQNKL-IKARKPYLHESRHLHALKRARGSGGRF 237
                     79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
SMARTSM005211.1E-36179240IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.965180240IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.6E-26182237IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-22183205IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860185205IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-22214237IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MQSLCKRDSG ISSAHLGSPF IVGCSSWKNP TESNVYQSSI SKSLSLTMGV PAQHGHYAKQ  60
LSFQFQDQDS SSTQSTGQSH SEVASMKESN PSGQGMVSSN SGHNEALVRS VGGDIKLVSS  120
MGAQDFVFPS QLDYSQPIGR IPFHYAESCF NGLLGGAYGP QAMVMGLAPA RVPLPLDLTE  180
DEPIYVNSKQ YRAILRRRQY RAKLEAQNKL IKARKPYLHE SRHLHALKRA RGSGGRFLNA  240
KKVEESNPSR KIHGVDAAGF AQLHLTGNVS ESEVHQAENY KDGSSTTSCS EVTSASNSDS  300
IFQQPDFGFS SYPAHVRGNM GTHLVDASGG RNRCHLSALQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19181241262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015865962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865962.10.0nuclear transcription factor Y subunit A-3
RefseqXP_015865980.10.0nuclear transcription factor Y subunit A-3
RefseqXP_024932654.10.0nuclear transcription factor Y subunit A-3
TrEMBLA0A314XXE21e-150A0A314XXE2_PRUYE; Nuclear transcription factor Y subunit A-3 isoform X1
STRINGXP_008228224.11e-148(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-66nuclear factor Y, subunit A3