PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015866013.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 593aa MW: 67794.7 Da PI: 8.5025

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015866013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	55	141	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAke+GFs+r s++k+ k +e+ + +fvC keg ++ ++ + ++r r tr +Ckakl v ++k+gk+++t +++eHnH+l+ XP_015866013.1 55 EFYIKYAKEAGFSIRSSSTKRCKGANEVGRIEFVCFKEGVSSIKDGE---RKRCRGMTRENCKAKLAVVRSKTGKFVITVFVEEHNHPLS 141 6***************************************99877...99999*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-19	55	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.2E-34	262	354	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MSVEQLEANS DCRRVEDISL LLYSKSMDDV YIPQVSENCK PKVGQEFESI DGAHEFYIKY 60 AKEAGFSIRS SSTKRCKGAN EVGRIEFVCF KEGVSSIKDG ERKRCRGMTR ENCKAKLAVV 120 RSKTGKFVIT VFVEEHNHPL SNPRRVHLLR SHRSVSEAKK SLTLQFSVAN VSTHQQISIL 180 EFEAGGIENI GCTKKDIYNH EAKVRNELRG QDAELLKEYF LTEQEKDPCF FFKIDVDDDG 240 KLKRCFWADS VSRRAYGCFG DVVVFDTTYN TNQYGMIFAP LVGVNNHGQT VLFACAFLSD 300 EKTESFVWLF ELLKDSMPKN NPKMIITDQD PAMTKAIVQS FPNTFHRYCS WHILDKFSTY 360 LNAITYRDFY KDFQQCILES KCPEEFERKW VTTIEKASLD NNDWLKSIFE LRSRWVPAYV 420 NHIFSARMSS SQRAESSHAF FKKYVSKRNL LMDFILRFNR ALAHQRHEEL GADRVDINEK 480 LIESIVSNTK SGGISEKDST AHDYEALKDP SAVRAKGCGQ RLKRGKEKAT NAVKYRGRRC 540 NGCGKIGQSH DKRNCPLLNN LSSQNEKSLQ HASEYDSEAD SLSSTGLHEK TKG

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MSVEQLEANS DCRRVEDISL LLYSKSMDDV YIPQVSENCK PKVGQEFESI DGAHEFYIKY  60
AKEAGFSIRS SSTKRCKGAN EVGRIEFVCF KEGVSSIKDG ERKRCRGMTR ENCKAKLAVV  120
RSKTGKFVIT VFVEEHNHPL SNPRRVHLLR SHRSVSEAKK SLTLQFSVAN VSTHQQISIL  180
EFEAGGIENI GCTKKDIYNH EAKVRNELRG QDAELLKEYF LTEQEKDPCF FFKIDVDDDG  240
KLKRCFWADS VSRRAYGCFG DVVVFDTTYN TNQYGMIFAP LVGVNNHGQT VLFACAFLSD  300
EKTESFVWLF ELLKDSMPKN NPKMIITDQD PAMTKAIVQS FPNTFHRYCS WHILDKFSTY  360
LNAITYRDFY KDFQQCILES KCPEEFERKW VTTIEKASLD NNDWLKSIFE LRSRWVPAYV  420
NHIFSARMSS SQRAESSHAF FKKYVSKRNL LMDFILRFNR ALAHQRHEEL GADRVDINEK  480
LIESIVSNTK SGGISEKDST AHDYEALKDP SAVRAKGCGQ RLKRGKEKAT NAVKYRGRRC  540
NGCGKIGQSH DKRNCPLLNN LSSQNEKSLQ HASEYDSEAD SLSSTGLHEK TKG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015866013.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015866013.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067D5X9	0.0	A0A067D5X9_CITSI; Uncharacterized protein
STRING	XP_008365955.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-93	FAR1-related sequence 5