PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866028.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 97aa    MW: 10886.2 Da    PI: 9.6768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-081155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+   + + +a + + ++   +W  +a+ +g g+t++++k ++ 
   XP_015866028.1 11 SWTAKQNKAFEKALAVFDKDtpdRWYNVAKAVG-GKTAEEVKRHYE 55
                     7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.063762IPR017884SANT domain
SMARTSM007171.2E-6860IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-121066IPR009057Homeodomain-like
PfamPF002497.9E-61155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-41162IPR009057Homeodomain-like
CDDcd001671.01E-51258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASSSMSSSS SWTAKQNKAF EKALAVFDKD TPDRWYNVAK AVGGKTAEEV KRHYELLVQD  60
VKYIESGQVP FPNYRTTGGN SYGSTADEEK RMRNIKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-43397292RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866028.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866028.12e-67protein RADIALIS-like 1
SwissprotF4JVB85e-45RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2P5CA433e-52A0A2P5CA43_PARAD; Octamer-binding transcription factor
STRINGXP_010088924.19e-53(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.19e-47RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]