PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015866182.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 198aa MW: 21193.2 Da PI: 7.3104

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015866182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.4	2.1e-42	49	148	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la XP_015866182.1 49 PCAACKILRRRCADKCVLAPYFPPTEPTKFTIAHRVFGASNIIKLLQELPESQRADAVTSMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLA 143 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_015866182.1 144 KAQAE 148 *9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.011	48	149	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-42	49	146	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MNMDYSSDAN TTTITTTSSL SPSSSSSPPP PHPPPPSSPP SPPPVVVSPC AACKILRRRC 60 ADKCVLAPYF PPTEPTKFTI AHRVFGASNI IKLLQELPES QRADAVTSMV YEAGARIRDP 120 VYGCAGAICQ LQKQVNELQA QLAKAQAEVV NMQCQHANLV ALICMEMAQS QQGLPQQTLA 180 DSFIATSPHS NQTNMGFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-43	44	154	6	116	LOB family transfactor Ramosa2.1
5ly0_B	3e-43	44	154	6	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015866182.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015866182.1	1e-143	LOB domain-containing protein 11-like
Swissprot	Q9SK08	2e-72	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A498KG04	5e-90	A0A498KG04_MALDO; Uncharacterized protein
STRING	XP_008224697.1	4e-92	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	9e-64	LOB domain-containing protein 11