PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866409.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 109aa    MW: 12708.5 Da    PI: 9.347
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.9e-12121001095
                     HHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3  10 vlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                       k + +++p +f + +    gg    ++t++ +d +g ++++ l++rk+ ++     ++ +kGW++Fvk+ng+ +gD ++F   ++ +++e+v+
  XP_015866409.1  12 DYK-SKFTVPPEFHDLInhcdGGA---ETTVKAYD-TGFRYDFVLSVRKGERKkymkpVFQQKGWQRFVKDNGVLTGDNITFW--KDvQTGEFVI 99 
                     333.44899999965445464333...34677777.99*******99777776444445556********************9..4446776666 PP

                     E CS
              B3  95 k 95 
                     +
  XP_015866409.1 100 R 100
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.6842105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-8499IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-96100No hitNo description
SuperFamilySSF1019361.08E-9999IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-91499IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MAVLSKEVSE TDYKSKFTVP PEFHDLINHC DGGAETTVKA YDTGFRYDFV LSVRKGERKK  60
YMKPVFQQKG WQRFVKDNGV LTGDNITFWK DVQTGEFVIR SVRPYINYL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-