PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866410.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 109aa    MW: 12646.4 Da    PI: 9.4671
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-121198993
                    HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
              B3  9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93
                       k +rl++p +f + ++g  +++ ++ ++   +g ++++ l++r++ g+     ++ ++GW++Fvk+ng+ +gD+++F  d++ +ef  +
  XP_015866410.1 11 TDYK-SRLSVPTEFHSLINGC-HGGAEIAIRAyDTGFRYDFVLSVRNGAGQiyqkpVFQRRGWQRFVKENGVLTGDTITFWKDQQiEEF--M 98
                    4444.56*******9777544.35557777776799*********999999666666666********************976665665..4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.0092105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-9591IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-126100No hitNo description
SuperFamilySSF1019361.22E-10694IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-91498IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MAALSKEVTE TDYKSRLSVP TEFHSLINGC HGGAEIAIRA YDTGFRYDFV LSVRNGAGQI  60
YQKPVFQRRG WQRFVKENGV LTGDTITFWK DQQIEEFMIR SVRPFKNYM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-