PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866451.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 563aa    MW: 65280.4 Da    PI: 7.6369
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866451.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.19.6e-2155141190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY +YAke+GFsv  s++k+ k  +e+++++fvC keg ++ ++ +   ++r r  tr +Ckakl v ++k+gk+++t +++eH+H+l+
  XP_015866451.1  55 EFYIKYAKEAGFSVHSSSTKRCKGVKEVVRKEFVCFKEGVSSIKDGE---RKRCRGMTRENCKAKLAVVRSKTGKFVITVFVEEHSHPLS 141
                     6*****************************************99877...99999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1855141IPR004330FAR1 DNA binding domain
PfamPF105511.5E-32262355IPR018289MULE transposase domain
PROSITE profilePS5096610.892517549IPR007527Zinc finger, SWIM-type
PfamPF044342.2E-6521543IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-5524551IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSVEQLEANS YCRRVEDISL LSHSKSVDDV YIPQVAENCK PKVGQEFESI DGAHEFYIKY  60
AKEAGFSVHS SSTKRCKGVK EVVRKEFVCF KEGVSSIKDG ERKRCRGMTR ENCKAKLAVV  120
RSKTGKFVIT VFVEEHSHPL STPRRVHLLR SHRSVSEAKK SLTLQFSAAN VPTHQQISIL  180
EFEAGGIENI GCTKKDIYNH EAKVRNELRG QDAELLKEYF LTEQEKDPCF FFKIDVDDDG  240
KLKRCFWADS VSRKAYGCFG DVVVFDTTYN TNQYGMIFAP LVGVNNHGQT VLFACAFLSD  300
EKTESFVWLF ELLKDSMPTN NPKMIITDQD LAMTKAIVQS LPNTFHRYCS WHILEKFSTY  360
LNAITYRDFY KDFQQCIWES ECPEEFERKW VTTIEKASLD NNDWLKSIFE LRSRWVPAYV  420
NHVFSAGMSS SQRAESSHAF FKKYVSKRNL LMDFILRFNR ALAQQRHEEL GADHFQDELW  480
NSLEIMPQFV REYATHKMYV VESSPKERVR RVREIAYDKE LDFVSCTCKK FESEGLPCRH  540
ILAFLRLFGS IPLPNSIYNE KVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866451.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866451.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A067D5X90.0A0A067D5X9_CITSI; Uncharacterized protein
TrEMBLV4URE30.0V4URE3_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006428864.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-100FAR1-related sequence 5