PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866516.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 189aa    MW: 22124.2 Da    PI: 5.7
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.37.3e-2481511128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratk..sgyWk 84 
                     +p+G+ F+Ptd+elv +yL +k++g +++   +i e d + + ePw++ +          +a+++++yfF+k +k++++gkr  r++    g+Wk
  XP_015866516.1   8 VPRGCSFRPTDDELVGYYLMNKATGCPCPDLAMILEYDFLgDKEPWEIWNlfqpcifrYWDAHHEDLYFFTKLKKSNPRGKRICRKVGstGGTWK 102
                     589************************999999*9*9865167*****6446787776555678899******************7544489*** PP

             NAM  85 atgkdkevlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                      + +  ev++  +++++glkk + +     ++++++    +W+m ey l
  XP_015866516.1 103 GQDSGSEVYDDlSKQVIGLKKRFQYQkaktEEDDEEDDGVSWIMFEYCL 151
                     **********988999**********443333444555789******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-294170IPR003441NAC domain
PROSITE profilePS5100529.0858170IPR003441NAC domain
PfamPF023652.7E-179151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MALEESMVPR GCSFRPTDDE LVGYYLMNKA TGCPCPDLAM ILEYDFLGDK EPWEIWNLFQ  60
PCIFRYWDAH HEDLYFFTKL KKSNPRGKRI CRKVGSTGGT WKGQDSGSEV YDDLSKQVIG  120
LKKRFQYQKA KTEEDDEEDD GVSWIMFEYC LAGSLAMINT DYVLCQIRKK FPTQHNHKIN  180
MYTNISYMQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866516.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866516.11e-143protein CUP-SHAPED COTYLEDON 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-14NAC family protein