PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015866729.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 244aa MW: 26794.2 Da PI: 9.5593

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015866729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.7e-13	172	217	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq XP_015866729.1 172 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 217 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	166	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-16	169	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-12	170	219	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.2E-15	171	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-10	172	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-11	172	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MTGSNIAGFA TIKCAGNYGG LNGSNGEVSP PTNRLKSHLS FSSRFPTSLG MLSQISEIGS 60 ENLGAGGLEE GKLGSSNGDG RFYGTGFPLG SWSDSSNFTE SLGGLRRDQD NDRKLFSSTQ 120 NEEFGNRIHL LSHHLSLPKT SADVAMEKLL HFQDSVPCKI RAKRGCATHP RSIAERVRRT 180 RISERMRKLQ ELVPNMDKQT NTADMLDLAV EYIKDLQKQF KTLSDNRANC KCLNIQKPVS 240 NQVV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015866729.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015899049.1	1e-175	transcription factor bHLH130 isoform X1
Swissprot	Q66GR3	8e-78	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2P5F1I4	1e-139	A0A2P5F1I4_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010111430.1	1e-135	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5177	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	8e-79	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]