PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866980.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 257aa    MW: 28036.8 Da    PI: 9.0165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.4e-181560147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l+++v q+G+++W++I++ ++ gR++k+c++rw + 
   XP_015866980.1 15 KGSWSPQEDATLIKLVDQHGPRNWSLISSGIP-GRSGKSCRLRWCNQ 60
                     799*****************************.***********985 PP
2Myb_DNA-binding55.99.7e-1869111347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed ++v+a++ +G++ W+tIar ++ gRt++ +k++w++ 
   XP_015866980.1  69 PFTPAEDSIIVQAHAIHGNK-WATIARFLP-GRTDNAIKNHWNST 111
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.6561061IPR017930Myb domain
SuperFamilySSF466892.28E-3013108IPR009057Homeodomain-like
SMARTSM007171.6E-151463IPR001005SANT/Myb domain
PfamPF002494.5E-181560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-241668IPR009057Homeodomain-like
CDDcd001674.80E-151759No hitNo description
PROSITE profilePS5129425.12662116IPR017930Myb domain
SMARTSM007175.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1469111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2269115IPR009057Homeodomain-like
CDDcd001674.10E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVMMTAGMDG GDRVKGSWSP QEDATLIKLV DQHGPRNWSL ISSGIPGRSG KSCRLRWCNQ  60
LSPTVQHRPF TPAEDSIIVQ AHAIHGNKWA TIARFLPGRT DNAIKNHWNS TLRRRRRTAE  120
FSSPSSESNA ATKLPSVVEV ISGDSTESEP APAMKRQCLR ASPVHNNGDG KAGLVGIQTS  180
LTLSPPGESL VSVPPVERVG NDDVLKRQEV GMVEMGETCL VTMMQRMIAE EVRNYIESLR  240
AQDGLAFGFR PAVQNGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-38141153104MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-381411557158MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-381411557158MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-38141153104C-Myb DNA-Binding Domain
1msf_C2e-38141153104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117RRRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866980.10.0transcription factor MYB77-like
TrEMBLA0A067LKB31e-103A0A067LKB3_JATCU; MYB family protein
STRINGXP_010105436.11e-103(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-53myb domain protein 70