PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867230.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 268aa    MW: 31127.9 Da    PI: 6.1807
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151460248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + W +eEd++l+++v+ +G g+W+t+++  g+ R +k+c++rw +yl
   XP_015867230.1 14 NLWKPEEDLILKNYVETHGEGNWATVSKQSGLMRGGKSCRLRWKNYL 60
                     56*******************************************97 PP
2Myb_DNA-binding52.89.2e-1766111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_015867230.1  66 RGGMSQEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111
                      6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.534860IPR017930Myb domain
SuperFamilySSF466896.12E-2812107IPR009057Homeodomain-like
SMARTSM007174.3E-121262IPR001005SANT/Myb domain
PfamPF002491.3E-131460IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-221567IPR009057Homeodomain-like
CDDcd001671.62E-91660No hitNo description
PROSITE profilePS5129425.19561115IPR017930Myb domain
SMARTSM007172.4E-1665113IPR001005SANT/Myb domain
PfamPF002495.5E-1566111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2368114IPR009057Homeodomain-like
CDDcd001671.62E-1169111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MMENKRVKPQ PKKNLWKPEE DLILKNYVET HGEGNWATVS KQSGLMRGGK SCRLRWKNYL  60
RPNIKRGGMS QEEEDLIIRM HKLLGNRWSL IAGRLPGRTD NEVKNYWNTH LNKSCPRAKR  120
RPIESNQHQN NTITTEDEED TSTIKKKNNN KIRRLCNPSP SINRETQEDP SKRKEEQEEE  180
VEGGTRREEE SFSFVTNNPW IPDDKEISFN YNIESPIIMP ANNATFVLDD EPFIAYMDSF  240
LLFEAFGWSG SGEDCYAEST LGMESIIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-22511519128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296135e-94KP229613.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB57) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867230.10.0transcription factor MYB82 isoform X2
TrEMBLA0A2P5FPY31e-104A0A2P5FPY3_TREOI; MYB transcription factor
STRINGXP_010112475.11e-103(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.14e-63myb domain protein 82