PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867513.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 225aa    MW: 25969.5 Da    PI: 7.0981
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.2e-1213713799
                    EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    t++ ++gr W++ +  +k +gr+v+ +GW+eFv+ + +++g f+vF++dg s+f  +v ++++
  XP_015867513.1 13 TITVPNGRIWKLDF--QKLGGRIVFVDGWQEFVEYHSIDSGYFLVFRYDGFSKF--HVCILDE 71
                    566799********..********************************988888..9999876 PP
2B350.83e-161292141096
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++ ++   +p  f+ ++++   +s+ +t  + +g++W+v+++    ++ +r+ ++kGW++Fv++n+L +gD++vF+l+ ++ + l+v++
  XP_015867513.1 129 MSMKNKRHVPMGFVMTYMQG--CSQVIT-LTCNGKKWQVTFSLkeHRTVNRIRISKGWRGFVRDNNLGAGDVCVFELIMKKATLLKVSI 214
                     44455577899**9999744..775555.667*********995556666699***********************9976666566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.407172IPR003340B3 DNA binding domain
SMARTSM010190.19572IPR003340B3 DNA binding domain
CDDcd100176.98E-111070No hitNo description
SuperFamilySSF1019368.44E-151279IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-91370IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-141383IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.296120218IPR003340B3 DNA binding domain
SMARTSM010191.4E-9120218IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-18124215IPR015300DNA-binding pseudobarrel domain
CDDcd100177.51E-16124215No hitNo description
PfamPF023622.5E-14128214IPR003340B3 DNA binding domain
SuperFamilySSF1019361.47E-17128215IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MNINFVGGIV FATITVPNGR IWKLDFQKLG GRIVFVDGWQ EFVEYHSIDS GYFLVFRYDG  60
FSKFHVCILD ESGTEIYYPW NAASSDVEPH SDKESSEDHD QDNEDDDDDD VEIIDNKMFA  120
SRRLSRRQMS MKNKRHVPMG FVMTYMQGCS QVITLTCNGK KWQVTFSLKE HRTVNRIRIS  180
KGWRGFVRDN NLGAGDVCVF ELIMKKATLL KVSIYYADPA KKCSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867513.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867513.11e-169B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-16B3 family protein