PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015867515.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

YABBY

Protein Properties

Length: 175aa MW: 19438 Da PI: 8.0729

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015867515.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	77	6.2e-24	6	67	4	65
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshlde 65 + ++eq+Cy+ CnfCn +lavsvP +sl+ +vtvrCGhCt+l svn+a a q ++ ++ + XP_015867515.1 6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCTNLWSVNMAAAFQSMSWQDVQAQ 67 5689********************************************99998887775333 PP
2	YABBY	79.1	1.4e-24	107	148	130	170
YABBY 130 nr.fikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 nr f +eeiqrika+nPdishreafs+aaknWahfP+ihfgl XP_015867515.1 107 NRlFGREEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 148 443789**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-48	8	148	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MSSCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLLDIVTVR CGHCTNLWSV NMAAAFQSMS 60 WQDVQAQNYG YTAPTDYRID SGSSSRGSNK IAVRAPTANV TEERVVNRLF GREEIQRIKA 120 NNPDISHREA FSTAAKNWAH FPHIHFGLML ETNNQTKLDN GSGKHHLSRT PLLNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015867515.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090216	4e-75	BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024924682.1	1e-127	axial regulator YABBY 5-like
Swissprot	Q8GW46	3e-72	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D7TC40	4e-97	D7TC40_VITVI; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	6e-98	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-74	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]