PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867528.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ZF-HD
Protein Properties Length: 299aa    MW: 34222.1 Da    PI: 7.7707
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867528.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.88e-3153105457
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                     ++Y eC++NhAas+Ggha DGCgEfmp   ++g+ ++l+CaACgCHRnFHRre 
  XP_015867528.1  53 IKYGECMRNHAASIGGHANDGCGEFMPR-ADDGSRDSLTCAACGCHRNFHRREL 105
                     79*************************9.7779*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1853107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.2E-2853104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-2754104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.82155104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-27200269IPR009057Homeodomain-like
SuperFamilySSF466898.28E-18202269IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-25209265IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDLSVVPYNH SSTKPDINDS EYGDVVEPKP LDINTTINNH NNDDPSPLSA FHIKYGECMR  60
NHAASIGGHA NDGCGEFMPR ADDGSRDSLT CAACGCHRNF HRRELPGSDQ HYSVHSPPPP  120
PPPMLLYNAG PTTPRWDPKM VIRSQRHYHH QQHHYLHHRN RGRLIDHHDH HHEDVEEKEY  180
DRRSETPERE EVQVQVQHVG PTSRTTSCKR SRTKFTQEQK NRMLAFAEKI GWRIQRHDDL  240
ALNQFCSEVG VKRNVLKVWM HNNKNAHRRR ESVPPPPPLL PEAPPPQPPP PAPPQPVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-272072661675ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867528.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024924685.10.0zinc-finger homeodomain protein 2-like
TrEMBLW9RNK73e-94W9RNK7_9ROSA; Uncharacterized protein
STRINGXP_010104483.15e-95(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150921014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-23homeobox protein 21