PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867549.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 398aa    MW: 45958.9 Da    PI: 4.3591
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.51.9e-14165248286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt++e+ +L+ea  ++  + ++++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk+k    +   + +s+++yf++++
  XP_015867549.1 165 WTERETFVLLEAWGDRFLQRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKIKFVET--NGTSKWVYFKKMD 248
                     *************************************762678*********************9998873..45569*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-5164231IPR009057Homeodomain-like
PfamPF138374.5E-21164250No hitNo description
PROSITE profilePS500906.388165222IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDDTEDDARY PLNPYGVNHQ QGYGSSQRQK LPVRGGPYSR PVGNQYVDDD EEEEDEEDEE  60
LGEEEEDNNR QNNGFPPLRK DVGDDDDDED DDDNEDDEAE DEDGDKPKNF ERRVEDVDLE  120
RHPKKRKLKS LVSSYEFAPR LPAQSAAATS APRQSFGGRN SLTDWTERET FVLLEAWGDR  180
FLQRGKKSLR SEEWQEVAEK VSEVSKIERT DTQCRNRLDT LKKKYKKEKI KFVETNGTSK  240
WVYFKKMDML MSSPQQQAGL SCGLDSGEYV FMNPRVYLNR ANGSDEMRDS PGNSESAEGD  300
DDDSDGLPPK KRKYGRESED GSSFRLLADS IRKFSDIYEK IENSKRQQMV ELEKMRMEFH  360
RELEMQKRQI MERAQAEIAK IRQGDDEEND VSADNASG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867549.10.0trihelix transcription factor ASIL2-like
RefseqXP_015867557.10.0trihelix transcription factor ASIL2-like
RefseqXP_024931905.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A2P6RWQ20.0A0A2P6RWQ2_ROSCH; Putative transcription factor MYB family
STRINGXP_008228507.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-73Trihelix family protein