PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867574.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LBD
Protein Properties Length: 205aa    MW: 22519.9 Da    PI: 8.5765
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.41.3e-39181181100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_015867574.1  18 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARIRDPVYGCVAHIFTLQQQVVNLQAEL 112
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_015867574.1 113 AYVQAR 118
                     **9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.86617119IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-3818116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MHRERERVMM SGNNGGGPCG ACKFLRRKCV KGCIFAPYFD SDQGTAHFAA VHKVFGASNA  60
SKLLLRIPAH KRLDAVVTLC YEALARIRDP VYGCVAHIFT LQQQVVNLQA ELAYVQARLS  120
TLQRLPPAVA SSSPISLNSC SDLVSSSSAM SMHFDPLQTQ ASTEMTSYLS PLDQEMMNDG  180
DLQALARDFV CRYLPGVRFR PSTSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-37141127104LOB family transfactor Ramosa2.1
5ly0_B3e-37141127104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867574.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867574.11e-152LOB domain-containing protein 19-like
RefseqXP_015902800.11e-152LOB domain-containing protein 19-like
SwissprotO813223e-73LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2C9WPF01e-106A0A2C9WPF0_MANES; Uncharacterized protein
STRINGEOX961941e-105(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-73LOB domain-containing protein 31