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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_015867585.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 278aa MW: 30811.3 Da PI: 10.1956 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_015867585.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 348.5 | 1.5e-106 | 1 | 278 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82
mddd+ + rn+gyyep+ +k +lglqlmss+aerd+k r+ + + + +a++++rd m++ rd+++++ ++k+l
XP_015867585.1 1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMAERDTKAflpgRDPTV-MVSANATFHPRDcvvsdapvpMNY-VRDSWVNQ--------RDKFL 83
9***9999*******99..*******************99*9999999.999*********************.9******9........789** PP
GAGA_bind 83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
++l+++ +++v+++t+ ++slq+ l+++ + + e + iee + ++ke+ +kkrq++ k++k kk++k sk++
XP_015867585.1 84 NMLPANP--------NYGVIPETSGAHSLQM-----LQPPDTS--RDE--RVGRIEE-PVVNKESGPSKKRQNGGASKAPKVKKPRK----SKDN 156
****665........49**************.....5444444..222..2344444.56667888888899999999999999998....2233 PP
GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
++++ +r+k kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iSvyPLP+stkrrgaRiagrKmSqgafkk+LekL
XP_015867585.1 157 NNASV--PRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNISVYPLPMSTKRRGARIAGRKMSQGAFKKVLEKL 249
33333..679************************************************************************************* PP
GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
aaeGy++++p+DL++hWA+HGtnkfvtir
XP_015867585.1 250 AAEGYNFATPIDLRTHWARHGTNKFVTIR 278
****************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPSFKG HLGLQLMSSM AERDTKAFLP GRDPTVMVSA NATFHPRDCV 60
VSDAPVPMNY VRDSWVNQRD KFLNMLPANP NYGVIPETSG AHSLQMLQPP DTSRDERVGR 120
IEEPVVNKES GPSKKRQNGG ASKAPKVKKP RKSKDNNNAS VPRVKPAKKS MDVVINGIDM 180
DISGIPIPVC SCTGTPQQCY RWGCGGWQSA CCTTNISVYP LPMSTKRRGA RIAGRKMSQG 240
AFKKVLEKLA AEGYNFATPI DLRTHWARHG TNKFVTIR
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
