PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015867594.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 234aa MW: 25273.7 Da PI: 8.947

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015867594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.1	1.1e-41	47	145	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA+ r+rdPvyG++gvi++lq+ql++l+ael+ XP_015867594.1 47 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLQSLQAELN 141 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_015867594.1 142 AIRT 145 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.624	46	147	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-42	47	144	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSRDRERLED EIGKKIRGSE ISTVSANSQM GRRISFAPPG TLNTITPCAA CKLLRRRCAE 60 ECPFSPYFSP HEPQKFAAVH KVFGASNVSK LLMEVPESQR ADAANSLVYE ANLRLRDPVY 120 GCMGVISALQ HQLQSLQAEL NAIRTDILKY KYREAATHIV SSSLVSPGVV SIAAPPQAIS 180 PSPPPPRPPP PPPRPPSSVV ISSSSTSSTS SLYTPSTTTT GYSSLSSDNV PYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-45	37	154	1	118	LOB family transfactor Ramosa2.1
5ly0_B	9e-45	37	154	1	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015867594.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867594.1	1e-169	LOB domain-containing protein 15-like
Swissprot	Q9AT61	2e-76	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2P5AZ88	6e-97	A0A2P5AZ88_PARAD; Lateral organ boundaries domain containing protein
STRING	VIT_06s0004g07790.t01	2e-96	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-71	LOB domain-containing protein 15

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]