PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867693.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 760aa    MW: 84532.4 Da    PI: 6.1469
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867693.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21105160156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  XP_015867693.1 105 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 160
                     7999************************************************9877 PP
2START233.84.6e-732754993206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ++a++el ++a+a+ep+Wv+s+    e++n+de++++f+ +          +s+ea+r++g+v+m+l++lv++++d++ qW+e+++    ka+t
  XP_015867693.1 275 VNQATEELKTMATAGEPLWVRSVetgrEILNYDEYTKEFSVETPssgggrpkRSIEASREIGAVFMDLPRLVQSFMDVN-QWKEMFPcmisKAAT 368
                     578999*********************************77655999********************************.*************** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     ++vis+g      g +qlm++elq+l+p+vp R+++fvR+++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kvtwveh
  XP_015867693.1 369 VDVISNGegdnrnGSVQLMFSELQMLTPMVPtREVYFVRHCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVTWVEH 462
                     *************************************************************98.9****************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      +++++++h ++r +v+sg+a+ga++w+atlq qce+
  XP_015867693.1 463 LECQKSTVHTMYRTIVSSGMAFGARHWMATLQLQCER 499
                     ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-2189163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-2391156IPR009057Homeodomain-like
PROSITE profilePS5007118.22102162IPR001356Homeobox domain
SMARTSM003898.3E-19104166IPR001356Homeobox domain
PfamPF000461.0E-18105160IPR001356Homeobox domain
CDDcd000867.59E-17109160No hitNo description
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PROSITE profilePS5084839.697264502IPR002913START domain
SuperFamilySSF559613.43E-33266499No hitNo description
CDDcd088753.92E-113268498No hitNo description
SMARTSM002341.5E-76273499IPR002913START domain
PfamPF018527.9E-60274499IPR002913START domain
Gene3DG3DSA:3.30.530.203.0E-5329483IPR023393START-like domain
SuperFamilySSF559617.97E-14521721No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MLAMGVDMSN NPPTSHTKDY FASPALSLSL AGIFRDARAA AADTPAANVE VEEGDEGSGG  60
GRREDTVEIS SENSGPVRSR SDDEFDPEGD HDDGDGDDKN KKKKRKKYHR HTAEQIREME  120
ALFKESPHPD EKQRQQLSKQ LGLAPRQVKF WFQNRRTQIK AIQERHENSL LKTEMEKLRD  180
DNKAMREQIN KSCCPNCGTA TTSRDANMTT EEQQLRIENA RLKAEVEKLR AAIRKYPSGT  240
TSPSCSAGND QENRSSLDFY TGIFGLEKSR IMEIVNQATE ELKTMATAGE PLWVRSVETG  300
REILNYDEYT KEFSVETPSS GGGRPKRSIE ASREIGAVFM DLPRLVQSFM DVNQWKEMFP  360
CMISKAATVD VISNGEGDNR NGSVQLMFSE LQMLTPMVPT REVYFVRHCK QLSAEQWAIV  420
DVSIDKVEDN IDASLVKCRK RPSGCIIEDK SNGHCKVTWV EHLECQKSTV HTMYRTIVSS  480
GMAFGARHWM ATLQLQCERL VFFMATNVPM KDSTGVATLA GRKSILKLAQ RMTSSFCRAI  540
GASSYNIWTK VSGKTGEDIR IASRKNLNDP GEPLGLILCA VSSVWLPISP HVLFDFLRDE  600
SRRNEWDIMS NGNQVQSMAN LSKGQDRGNA VTIQTTKSNE NSMWILQDCC TNAYESTVVY  660
AQVDITGMQT VMTGCDSSNL AILPSGFSIL PDGLDSRPLV ITSRREEKTA EGGSLLTVAF  720
QILTNTSPTA KLTMESVDSA NTLISCILKN IKTSLQCEDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105KKKKRK
2100106KKKKRKK
3102106KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867693.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867693.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLM5WXG00.0M5WXG0_PRUPE; Uncharacterized protein
STRINGXP_008228560.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]