PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867744.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 169aa    MW: 19576.8 Da    PI: 7.2922
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.5e-1537129199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk  ++s   +++ l +pk f++ +g++   s   t+  ++gr+W++ l  ++  gr+ +  GW++Fv+   +++g  ++F++dg s+f  +v 
  XP_015867744.1  37 FFKMIIQSTIDNKK-LKIPKVFVKIYGKE-LASSVATVSLPDGRTWKLGL--ERANGRTSFVVGWQRFVDHYSIRSGYCLLFRYDGFSKF--HVY 125
                     77877777777766.********777654.5555788888**********..99999999999*********************998888..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++++
  XP_015867744.1 126 ILDN 129
                     9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-2129129IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-1933128IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-1535128No hitNo description
PROSITE profilePS5086313.08436130IPR003340B3 DNA binding domain
PfamPF023621.6E-1037129IPR003340B3 DNA binding domain
SMARTSM010192.1E-1237130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MTPKRRNGGG NINVWPSRHN HHMHGPSSSK RKPKPHFFKM IIQSTIDNKK LKIPKVFVKI  60
YGKELASSVA TVSLPDGRTW KLGLERANGR TSFVVGWQRF VDHYSIRSGY CLLFRYDGFS  120
KFHVYILDNR SIEIYYPYNA QSATFDDDSE DHEVEPTYDD DDDDDDEDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867744.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024924774.11e-123B3 domain-containing transcription factor VRN1-like
RefseqXP_024924775.11e-123B3 domain-containing transcription factor VRN1-like
RefseqXP_024933603.11e-123B3 domain-containing transcription factor VRN1-like
RefseqXP_024933604.11e-123B3 domain-containing transcription factor VRN1-like
RefseqXP_024933605.11e-123B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-28B3 family protein