PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015867842.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LBD
Protein Properties Length: 337aa    MW: 36867.6 Da    PI: 7.3226
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015867842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.7e-391302311101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq++ l++el
  XP_015867842.1 130 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVAALQSEL 224
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     a+++++l
  XP_015867842.1 225 AMVQSQL 231
                     ***9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.98129231IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-39130228IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MYNTPFARAP HTTTLFLFTL LHSITSLSLS LSLSQNQSLP HSPCQPPPYH ETNVHTLHLH  60
ISTHGTILVI FCHSLPKLQL QPPFMSDHHH PQQPPDHAIS ESRRKPTGKR ATTSPTADPA  120
ASSESAPPAP CGACKFLRRK CVSGCIFAPH FGSDQGAARF AAVHKVFGAS NVSKLLLHIP  180
VNRRQDAVVT ISYEAQARLS DPVYGCVSTI LALQQQVAAL QSELAMVQSQ LMNSRFAFAN  240
VLQNSQLQQA QQQVVQEQSI GMVQAQPAYS ANNSSASINH INIGSFTSTF ELAGADTAPS  300
SQSLEPLQLS RPSQDEEEDE EESRIPHVFI NEILHRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-361202411119LOB family transfactor Ramosa2.1
5ly0_B7e-361202411119LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015867842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867842.10.0LOB domain-containing protein 20
SwissprotQ9SRV32e-72LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A1Q3D8G01e-108A0A1Q3D8G0_CEPFO; DUF260 domain-containing protein (Fragment)
STRINGXP_002525698.11e-103(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-55LOB domain-containing protein 20