PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015867955.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 296aa MW: 34347.7 Da PI: 6.4274

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015867955.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.3e-32	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFveav+qLGG+++AtPk il++m ++ Lt++hvkSHLQkYRl XP_015867955.1 40 KERLRWTQDLHDRFVEAVDQLGGPDRATPKGILKAMAIPRLTIYHVKSHLQKYRL 94 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.466	39	97	IPR017930	Myb domain
SuperFamily	SSF46689	4.12E-17	39	94	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.6E-30	40	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-26	40	95	IPR006447	Myb domain, plants
Pfam	PF00249	7.8E-8	42	93	IPR001005	SANT/Myb domain
Pfam	PF14379	5.4E-15	126	169	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MFLFPLLYNF SFVQVFFTWH LLWNMAMAST STTRSDVYGK ERLRWTQDLH DRFVEAVDQL 60 GGPDRATPKG ILKAMAIPRL TIYHVKSHLQ KYRLAKFIPE STNRGQFERK NISEILPNFS 120 TTSAAQLNEA LQMHMDTVQR RLSDQLEVQK SLKSKMEAQQ RFLETIAEEY PNTKLTKLRF 180 SSTSLPSLCE DSESNAKDQS ESDVEETDKK ETTIQSDQQG FRSLKRLRMD DQIVLPHGVI 240 KFPTMSPEFY NQSMVLSEGA DDDDHIPYPE QDFSFSWNSN NVAAQPAHRL WCHAFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-23	39	97	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-23	39	97	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-23	39	97	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-23	39	97	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-23	39	97	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-23	39	97	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-23	39	97	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-23	39	97	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015867955.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867955.2	0.0	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	3e-45	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2R6RXD5	8e-89	A0A2R6RXD5_ACTCH; Myb family transcription factor
STRING	VIT_08s0105g00370.t01	3e-87	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-47	G2-like family protein