PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868085.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 180aa    MW: 20570.7 Da    PI: 7.6021
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868085.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.4e-18103154155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y GVr+++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+  ++g
  XP_015868085.1 103 SSYIGVRRRP-WGKYAAEIRDSTRNG--MRIWLGTFDSAEAAALAYDQAAFTMRG 154
                     6799******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.58E-17103164No hitNo description
SuperFamilySSF541711.5E-22103163IPR016177DNA-binding domain
PfamPF008477.0E-13103154IPR001471AP2/ERF domain
PROSITE profilePS5103221.812104162IPR001471AP2/ERF domain
SMARTSM003804.4E-35104168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-28104162IPR001471AP2/ERF domain
PRINTSPR003676.1E-9105116IPR001471AP2/ERF domain
PRINTSPR003676.1E-9128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGFSFFPYPN FETQTELSHS LTRSSATAFS WEYDIEFPYS QDLISFDTTI DIIGDDSKNR  60
HPSDDNSIAQ EIAREMISSE TISSSNVHER KREGRGSSKN ERSSYIGVRR RPWGKYAAEI  120
RDSTRNGMRI WLGTFDSAEA AALAYDQAAF TMRGPTAVLN FDVQRVRNCI KRSGWQTRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2694161571Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868085.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4415385e-31AM441538.1 Vitis vinifera contig VV78X221412.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868085.11e-132ethylene-responsive transcription factor 1B-like
TrEMBLA0A2K3NGF21e-33A0A2K3NGF2_TRIPR; Ethylene-responsive transcription factor 1b-like protein
STRINGXP_009619700.14e-33(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-25ethylene response factor 1