PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868087.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 233aa    MW: 26365.6 Da    PI: 6.5211
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18102152255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+++AeIrd +    +  r++lg+f+tae Aa a+++a+ +++g
  XP_015868087.1 102 SYRGVRKRP-WGKYAAEIRDSTR---HgIRVWLGTFDTAEAAALAYDQAAFSMRG 152
                     69*******.**********422...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.87E-20101161No hitNo description
PROSITE profilePS5103222.945102160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-30102161IPR001471AP2/ERF domain
SMARTSM003806.4E-38102166IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22102162IPR016177DNA-binding domain
PfamPF008473.1E-13102152IPR001471AP2/ERF domain
PRINTSPR003671.1E-10103114IPR001471AP2/ERF domain
PRINTSPR003671.1E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MFHFHQTQTL NFSNMASSFL QFPTSKIFSP ESSFGSPESF DWDELLSDHT IYSTSFPFNT  60
NAADHVGVKE TSVETNSSVE IKEEEVTSSV AKEERVCEKE KSYRGVRKRP WGKYAAEIRD  120
STRHGIRVWL GTFDTAEAAA LAYDQAAFSM RGSLAVLNFP VETVRQSLQE MKYQWEEGCS  180
PVMTLKKKHS MRRKRISRKS KVKKEEVVVL EDLGAAYLEE LLSLSSCESG SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-3096162874Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197204RKSKVKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868087.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868087.11e-173ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y99e-66ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2R6PP942e-82A0A2R6PP94_ACTCH; Ethylene-responsive transcription factor 1B like
STRINGPOPTR_0005s24460.13e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-37ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]