PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868130.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 324aa    MW: 36763 Da    PI: 6.6247
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868130.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l d ++ +G g W+  +++ g++R++k+c++rw++yl
   XP_015868130.1 14 RGAWTAMEDKILTDHIRIYGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding50.16.4e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++
   XP_015868130.1  67 RGNISRDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      788999****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.9961IPR017930Myb domain
SuperFamilySSF466894.59E-2712108IPR009057Homeodomain-like
SMARTSM007177.5E-131363IPR001005SANT/Myb domain
PfamPF002494.2E-131461IPR001005SANT/Myb domain
CDDcd001672.60E-101661No hitNo description
PROSITE profilePS5129424.79762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2365116IPR009057Homeodomain-like
SMARTSM007175.4E-1566114IPR001005SANT/Myb domain
PfamPF002495.7E-1467110IPR001005SANT/Myb domain
CDDcd001671.23E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAM EDKILTDHIR IYGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SRDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKIKGNN  120
SSYTTCRNEK AKISPQTVRH STIQPSKGSN SINSHVVRTK ASRCTKAVLV PHHFPKLNQI  180
DNHDHDDTNG KPAPVFPPPC VDIDQANHDQ GVVDLQPSSL ALLSDENNSS EFMMDFELDE  240
NFLSDFPSNI DFLHLTYNLD NGGEDDNNID IATTSSEFET GQSSSPKSDH HQNLLFSQDH  300
MLYEVDLEST TSVVDPHVFD WLQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272138e-87AB627213.1 Malus x domestica mRNA, microsatellite: MEST039, clone: FRT01_18_F07.
GenBankDQ0744638e-87DQ074463.1 Malus x domestica MYB11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868130.10.0myb-related protein Zm38-like
SwissprotQ9FJA21e-60TT2_ARATH; Transcription factor TT2
TrEMBLA0A0N7G7411e-100A0A0N7G741_PRUAV; R2R3 MYB transcription factor
STRINGXP_008228205.11e-100(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-60MYB family protein
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Liu C,Jun JH,Dixon RA
    MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
    Plant Physiol., 2014. 165(4): p. 1424-1439
    [PMID:24948832]
  3. Zhu Z, et al.
    Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
    J. Exp. Bot., 2015. 66(13): p. 3775-89
    [PMID:25911741]
  4. Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
    Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
    BMC Plant Biol., 2015. 15: p. 160
    [PMID:26109181]
  5. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  6. Li Y, et al.
    Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
    Sci Rep, 2016. 6: p. 30514
    [PMID:27465838]
  7. Li C,Zhang B,Chen B,Ji L,Yu H
    Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
    Nat Commun, 2018. 9(1): p. 571
    [PMID:29422671]