PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868200.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family DBB
Protein Properties Length: 214aa    MW: 22979.3 Da    PI: 7.7608
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-06447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ ++  e++  C  ++  lC  C ++ H        H++vpl
  XP_015868200.1  4 QCNGCQTAEANVLCCADEAALCWACDQKVHAAnklagkHQRVPL 47
                    7******99*********************66899999999986 PP
2zf-B_box28.82.6e-095495237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     ++kC+ ++e    +fC +++ llC++C +++H        H
  XP_015868200.1 54 PMPKCDICQETIGYFFCLQDRALLCRKCDVAIHTAnpyvssH 95
                    689*******999********************555566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.452147IPR000315B-box-type zinc finger
CDDcd000216.98E-7347No hitNo description
SMARTSM003362.3E-9447IPR000315B-box-type zinc finger
PfamPF006432.5E-5447IPR000315B-box-type zinc finger
SMARTSM003366.1E-1653100IPR000315B-box-type zinc finger
PROSITE profilePS501199.0353100IPR000315B-box-type zinc finger
PfamPF006435.3E-75495IPR000315B-box-type zinc finger
CDDcd000215.13E-756100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKIQCNGCQT AEANVLCCAD EAALCWACDQ KVHAANKLAG KHQRVPLSSS SSSPMPKCDI  60
CQETIGYFFC LQDRALLCRK CDVAIHTANP YVSSHQRFLL TGVKVGLEAT GPCVSPPMGN  120
FDSIKKPSEC AISQSASRKV VVPSTSEIKE AILPVQNDRA GTIITNTTPF NGATSSGSTP  180
AGWHLQEYLG LTNLDQNHGV LDNIPTKFAG RYCM
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868200.11e-160B-box zinc finger protein 22-like
SwissprotQ9SYM22e-68BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2N9FCT56e-86A0A2N9FCT5_FAGSY; Uncharacterized protein
STRINGXP_009762543.13e-80(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.19e-68light-regulated zinc finger protein 1