PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868332.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CPP
Protein Properties Length: 813aa    MW: 89779.6 Da    PI: 6.1403
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.12.3e-15477515341
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     +k+CnCk+skClk+YCeCfaag++C ++C Ce+C Nk e
  XP_015868332.1 477 CKRCNCKRSKCLKLYCECFAAGVYCVDSCACENCYNKPE 515
                     89**********************************975 PP
2TCR43.66e-14562601140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+gCnCkkskClkkYCeC++a++ Cs+ C+Ce C+N+ 
  XP_015868332.1 562 RHKRGCNCKKSKCLKKYCECYQAQVGCSDGCRCECCQNSF 601
                     589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.6E-15475516IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.907476602IPR005172CRC domain
PfamPF036382.2E-11478513IPR005172CRC domain
SMARTSM011147.3E-14562603IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.8E-10564600IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MDHSPEPNRI PTTLSSPSFS SPAVQESPFF NYASNLSPIK SAKATRYAQR FLEINLSTPP  60
PVFTSPRIDM QREDSFSGRD EMVEAGNIYK QGGTLSNVVH IPSFEKEFRS CTRLGGIDGY  120
ITEPVGVEDS KNSADLGLRP DNEVPQLLTS GFTSPNETIT EVEDLDRTAE VRALMLSDQA  180
AENQPSSSLK LVESTVDQRD NGKVKEDISD FTFDKDESDI NVDLVSGEQN CGGHGAQEAS  240
QHHHGICRHL QFEAAMAYNG TTSTNSNSLC GLTDDTKNVR LPDSLSNLKN LVPFQYEMEA  300
SNGQQSVNHV QSMPPQFPSC PFEMLNSSQN CGNAIMSSTI PYGTGFHMNN IRLSDMFASE  360
KLHGHPNSQE RLMPDMANAL GKDLHSSFSN GVGDVHSHMN NDQPGSQSVM EDNNVPSHTS  420
DHVKPLGNPM HLALIEQHAA PCDGSIYASQ DTEMVEESKQ LSPKRRRKRS AYMTEGCKRC  480
NCKRSKCLKL YCECFAAGVY CVDSCACENC YNKPEFEDTV MDTRQQIESR NPLAFAPRVV  540
KHATDSPANV TEEGNWTPSS ARHKRGCNCK KSKCLKKYCE CYQAQVGCSD GCRCECCQNS  600
FGKKSETIYK RAEKWDTFSN ENIDALKSGV DYIKAETRNA NQVAQTWEPL ADITNITPLS  660
HTSSGVWESS SSNFRDYSKV SGVQLRPGIR FQSSAPSSIN WNCSPDRLMA QFSDTQASHC  720
LSSNAAFYGL IDNDTPQILK ENSTPCKAVK VSSPHQKHES SPQFQSHGLS SGSPPSLRGG  780
RKFILQSMPT FPPLTPYSKS KDKYRTDFEA TSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1647859912120Protein lin-54 homolog
5fd3_B7e-1647859912120Protein lin-54 homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868332.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868332.10.0protein tesmin/TSO1-like CXC 3 isoform X1
RefseqXP_024924979.10.0protein tesmin/TSO1-like CXC 3 isoform X2
TrEMBLA0A251PX430.0A0A251PX43_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142771417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.19e-65Tesmin/TSO1-like CXC domain-containing protein