PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868687.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 349aa    MW: 39860.2 Da    PI: 9.6462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-181762147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
   XP_015868687.1 17 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 62
                     899*****************************.***********996 PP
2Myb_DNA-binding60.24.5e-1969112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
   XP_015868687.1  69 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 112
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.5721263IPR017930Myb domain
SuperFamilySSF466891.27E-2916110IPR009057Homeodomain-like
SMARTSM007178.4E-151665IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-271870IPR009057Homeodomain-like
PfamPF139212.7E-172080No hitNo description
CDDcd001673.53E-132061No hitNo description
PROSITE profilePS5129428.36664118IPR017930Myb domain
SMARTSM007172.4E-1668116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2171117IPR009057Homeodomain-like
CDDcd001674.24E-780111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEDSGPGCSD DSKTCPRGHW RPAEDEKLRQ LVEQYGAQNW NSIAEKLQGR SGKSCRLRWF  60
NQLDPRINRR PFTEEEEERL LAAHRIHGNK WALIARLFPG RTDNAVKNHW HVIMARKQRE  120
QSKLCGNKRS YQDLCNNNSE PSSINFLTRK AAAQGEFKLG NGLVENAKLF QINHNPNKDR  180
KLASMDNNNN SSPSSSPSWN FFSLGASSNR LSSASSLSMR REGRDCFKSS TTTTTSANYY  240
ISSEISKGII NSDQHLLYKI NPTSTSSSSL WYGSFGLQSY KRVVPSSPFE CFNLNHDRHH  300
HHHHHYEHHG RSKRELTKSI LQEKEDQESN IDQNKQVPFI DFLGVGISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31171177107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868687.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868687.10.0transcription factor MYB119-like
TrEMBLA0A067H7L11e-108A0A067H7L1_CITSI; Uncharacterized protein
TrEMBLA0A2H5PI501e-108A0A2H5PI50_CITUN; Uncharacterized protein
TrEMBLV4TD411e-108V4TD41_9ROSI; Uncharacterized protein
STRINGXP_006473036.11e-109(Citrus sinensis)
STRINGXP_006434346.11e-109(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.15e-63myb domain protein 52