PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868779.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 478aa    MW: 51200.7 Da    PI: 8.9128
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-115076127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ ++C +++rtG+C yG+rC+++H++
  XP_015868779.1 50 PGVPNCVYYMRTGFCGYGSRCRYNHPR 76
                    5789*********************96 PP
2zf-CCCH40.16.3e-1397121327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C+++++tGtCk+G++CkF+H++
  XP_015868779.1  97 EPVCQYYLKTGTCKFGASCKFHHPK 121
                     789********************96 PP
3zf-CCCH36.58e-12142167227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ +C+++++tG+Ck+G +CkF+H++
  XP_015868779.1 142 GETECSYYLKTGQCKFGITCKFHHPQ 167
                     7789********************97 PP
4zf-CCCH352.4e-11299325127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++ +tG CkyG++C+++H++
  XP_015868779.1 299 PGEPECQYYIKTGDCKYGSSCRYHHPR 325
                     5799*********************96 PP
5zf-CCCH34.92.6e-11346371227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +   C f++++G+Ck+G++CkF H++
  XP_015868779.1 346 GVQVCTFYLQNGHCKFGSTCKFDHPM 371
                     5678********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.8E-64976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.224977IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-85176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-65378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-794121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.67694122IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-1097121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-697121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-599121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54140168IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5140167IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4146166IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5298325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366298326IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-8300325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6303327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5304325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14344372IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6344371IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9346371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-7346375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5348371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MELYGRSPAR NGSNPVHQPE WSPVPAGGET GLEESMWQLG LSSESYPERP GVPNCVYYMR  60
TGFCGYGSRC RYNHPRDRAA VAAAVRATGE YPERVGEPVC QYYLKTGTCK FGASCKFHHP  120
KHGGGSLSQA PLNIYGYPLR PGETECSYYL KTGQCKFGIT CKFHHPQPAG TSVSASAPQF  180
YPTVQSPSVP MPEQYPGAST SLRVARPPLL PGSYVQGAYG PMLFPPGVVP LHGWSPYSAP  240
VSPVLSPGAA QPPVAATSLY GVTQLSSSSP ALARPFPSLP SSIGASSSSP KEQAFPERPG  300
EPECQYYIKT GDCKYGSSCR YHHPRDRVVP RTNCLLSPIG LPLRPGVQVC TFYLQNGHCK  360
FGSTCKFDHP MGNMRYNPSA SSLIDMPVTP YPVGNLLGTL APSSTSSELR PELISGSKKE  420
SYSTRMPSSA NTSSSSVGLI FSQTGSVSLS EVQLSSQSSV PLSSSRSTRQ GGEVRRSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868779.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868779.10.0zinc finger CCCH domain-containing protein 32-like
RefseqXP_015869584.10.0zinc finger CCCH domain-containing protein 32-like
RefseqXP_015870642.10.0zinc finger CCCH domain-containing protein 32-like
RefseqXP_015870644.10.0zinc finger CCCH domain-containing protein 32-like
RefseqXP_015870658.10.0zinc finger CCCH domain-containing protein 32-like
RefseqXP_015870708.10.0zinc finger CCCH domain-containing protein 32-like
RefseqXP_015870771.10.0zinc finger CCCH domain-containing protein 32-like
RefseqXP_015871009.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A314XWJ50.0A0A314XWJ5_PRUYE; Zinc finger CCCH domain-containing protein 32
STRINGXP_008235007.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein