PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868969.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 166aa    MW: 18250.9 Da    PI: 9.1715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.4e-0556951054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  XP_015868969.1 56 KERKEKLGERIVALQQLVSPY-----GKTDTASVLLEAMEYIQFL 95
                    778889999999******999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.10E-544100No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1045114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1245110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.2144695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-452101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MIVSSLCTAG TKFSREEGIG VGKMTEHKRG PCSVDQTSLT SLASKRQKAE FSISNKERKE  60
KLGERIVALQ QLVSPYGKTD TASVLLEAME YIQFLHEQVK VLSAPYLQSS PTAKMQELEL  120
YSLRSRGLCL VPVSSTIGVD SSNGADIWAP IKTTSPKFEK SISHFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868969.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868969.11e-120transcription factor bHLH153-like isoform X1
RefseqXP_015869909.11e-120transcription factor bHLH153-like isoform X1
SwissprotQ7XJU22e-62BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A314ZKI92e-96A0A314ZKI9_PRUYE; Transcription factor bHLH113 isoform X1
STRINGXP_008222500.12e-97(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.59e-65bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]