PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869078.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 222aa    MW: 26206.4 Da    PI: 6.5112
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll+++v+++G g W++++++ g++R++ +c+ rw++yl
   XP_015869078.1 14 KGAWTQEEDDLLKHCVNKYGEGKWNKVPQRAGLNRCGRSCRTRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding40.75.7e-1369112348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       + ++E +ll++++k+lG++ W+ Ia +++ gRt++ +k++w+++l
   XP_015869078.1  69 EFMEDEVDLLIRLHKLLGNR-WSIIAGRLP-GRTANCVKNYWNTHL 112
                      56789***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0881165IPR017930Myb domain
SuperFamilySSF466891.36E-2911108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-221263IPR009057Homeodomain-like
SMARTSM007171.0E-151363IPR001005SANT/Myb domain
PfamPF002492.3E-171461IPR001005SANT/Myb domain
CDDcd001671.63E-101661No hitNo description
Gene3DG3DSA:1.10.10.605.9E-2264115IPR009057Homeodomain-like
SMARTSM007173.4E-1166114IPR001005SANT/Myb domain
PROSITE profilePS5129416.6366116IPR017930Myb domain
PfamPF002491.1E-1168112IPR001005SANT/Myb domain
CDDcd001676.76E-872112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEEEGQERCL GVRKGAWTQE EDDLLKHCVN KYGEGKWNKV PQRAGLNRCG RSCRTRWLNY  60
LKPDVNNGEF MEDEVDLLIR LHKLLGNRWS IIAGRLPGRT ANCVKNYWNT HLRKKVGDDE  120
EHLKDNDTPK MIQMKSNIYK PRPWKFSKHF HWGSNINNPT NIQPRKTSLI LEETQWYGEE  180
LPPNFCIEDL EHFDEAHQDQ TDYWEDSKGL DPRGLFNAEN EP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015869078.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869078.11e-166transcription factor MYB75-like
SwissprotQ9FNV91e-54MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2C9WK052e-62A0A2C9WK05_MANES; Uncharacterized protein
STRINGXP_010062250.12e-61(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]