PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869086.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 163aa    MW: 18451.7 Da    PI: 6.6345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869086.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-1991140254
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     +++GVr+++ +g+++AeIrdp++ng  +r +lg++ +ae+Aa a+++a+ k+ 
  XP_015869086.1  91 HFRGVRRRP-WGKYAAEIRDPKKNG--ARLWLGTYESAEDAALAYDRAAFKML 140
                     69*******.***********9998..***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-2590141IPR001471AP2/ERF domain
SMARTSM003805.7E-2691156IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1891141IPR016177DNA-binding domain
PfamPF008475.1E-1391140IPR001471AP2/ERF domain
CDDcd000184.92E-2491139No hitNo description
PROSITE profilePS5103220.3591150IPR001471AP2/ERF domain
PRINTSPR003671.4E-992103IPR001471AP2/ERF domain
PRINTSPR003671.4E-9115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSLQLQIMSQ SDLALLDSIR RHLLDDDFNT STLPFDPSPP PPPPPPTPQL LTFTNHHSHP  60
LLLQGSADTA GTVSHLEPEH RDSETRTQVR HFRGVRRRPW GKYAAEIRDP KKNGARLWLG  120
TYESAEDAAL AYDRAAFKML AMMADDKRFG LRPNSSWTEE DPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2590139453ATERF1
3gcc_A2e-2590139453ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015869086.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869086.11e-116ethylene-responsive transcription factor 2-like
TrEMBLA0A314UW565e-36A0A314UW56_PRUYE; Ethylene-responsive transcription factor 13-like
STRINGEMJ052702e-36(Prunus persica)
STRINGXP_004308505.12e-36(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-19ethylene responsive element binding factor 2