PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869190.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 283aa    MW: 31878.6 Da    PI: 9.6283
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11103149455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  +lP +     kK++Ka++L  A +Y+k+Lq
  XP_015869190.1 103 DHVIAERKRREKLTQRFIALSAILPGL-----KKMDKASVLGDALKYVKQLQ 149
                     5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.60899148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15103161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9104149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-10104153No hitNo description
SuperFamilySSF474599.03E-16104168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MQSPHGPQTV IERPAKQLKI TLDSSSSSHI ISFQSSNEST VKPKESVGYN SNGNGNMDFP  60
SLISYQDSYK QMQNLSTNYG QGVKRPVNDS AMRLSRTPSL AKDHVIAERK RREKLTQRFI  120
ALSAILPGLK KMDKASVLGD ALKYVKQLQE RLKTLEEQAT KKTVQSVVLV KRFHVSDEGD  180
ISSSDHNHNE VVNSCYDQLL PEVEARVLGK DVLIRIHSEK LDQGCLVKIL NEIEKLYLII  240
VNSSVLQFAN STHITIVAQM EIEFCMKAKE LARNLRHAFL NFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112ERKRRE
2108113RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015869190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869190.10.0transcription factor bHLH18-like
SwissprotQ9T0722e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2P5FHA12e-89A0A2P5FHA1_TREOI; Basic helix-loop-helix transcription factor
STRINGcassava4.1_010938m7e-87(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-56bHLH family protein