PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869261.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 182aa    MW: 20405.1 Da    PI: 10.36
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-121583699
                    EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    +tledesg+++e  +   +k+ +  l++GW+ F+ +++L++gD +vF+l++ ++f  +v ++r+
  XP_015869261.1  1 MTLEDESGQEFEAIY--IGKRTG--LSGGWRAFALDHKLDDGDALVFELIEPTRF--KVYIIRA 58
                    689************..555544..************************986777..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.52159IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-12159IPR015300DNA-binding pseudobarrel domain
CDDcd100175.86E-15157No hitNo description
SuperFamilySSF1019363.34E-13159IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-10158IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MTLEDESGQE FEAIYIGKRT GLSGGWRAFA LDHKLDDGDA LVFELIEPTR FKVYIIRASM  60
VSGGECDTKM HDKENTTERK RKSKVDMKLR SQSNQAKKKT TKASISKNDD SKSLPELSAK  120
CPIGNEIKQE RNPTEKNGCA SQKLEKKGRG EVNESNIVGD GDKGLTRKPR RKPASRSFRK  180
RA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015869261.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869261.11e-132putative B3 domain-containing protein At5g58280
TrEMBLA0A2P5DHU62e-50A0A2P5DHU6_PARAD; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-22B3 family protein