PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870030.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 577aa    MW: 61758.8 Da    PI: 9.2645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.7e-09373420455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_015870030.1 373 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 420
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.58E-11367424No hitNo description
SuperFamilySSF474597.2E-17367436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663369419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-17369435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-6373420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MVKIAYVARV SNGVGLKANL PSWKTNGFGD PFESALSSIV SSPAASNATA AISGGNNVGG  60
DCVMIRELIG RLGSICNSGE ISPQSCINNN NSNSTNNSCY GTPLNSPPKL NLSMVDPQIR  120
VNLPIPGGTH LPPSSSSSSH HTSLVAPFSA DPGFAERAAR FSSFGSKNFG GLNGQLLGLN  180
ETELPFRSIL RVESGKLSRA SSSNPLSVAG SQMGVQESNK SSPLEGNSAP DKKFNRLSRS  240
STPENAEFGD SREGSSVSEQ IPSGELSVKG ETDANTRKRK SIPRGKTKET PLSPSAKGSK  300
VAAGNDESNA KRSKTEEASG NAKDAAKTKA EANGGSKAAG DGNQKQTKDN SKPPEPPKDY  360
IHVRARRGQA TDSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ  420
RQVEFLSMKL ATVNPRSDLN MEALLSKDIF QSRGSLSQNP LYPLDSSVPA FPYGFNPTQM  480
PPLHSNMSNG TETQFPLNNL NSALHRNSSM QLPAIDGFGE AAQQVPKIFE DDLQSVVQMG  540
FGQIQQQSFH GMQNIHEKIQ YLKSESEKLN DFSSNES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280TRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870030.10.0transcription factor bHLH78-like
TrEMBLA0A0U2RCR80.0A0A0U2RCR8_9ROSA; BHLH transcription factor
STRINGEMJ230170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-84bHLH family protein