PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015870537.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NF-YA

Protein Properties

Length: 234aa MW: 25708.1 Da PI: 10.0531

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015870537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	94.9	9.1e-30	65	122	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRaklee.ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak++ e++l ++rk y+heSRh hAlrRpRg+gGrF XP_015870537.1 65 DGPIYVNAKQYHGIIRRRQSRAKAAVlENRL-PRTRKAYMHESRHLHALRRPRGCGGRF 122 57********************9879999.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.0E-32	63	125	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.286	64	125	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-22	67	89	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.2E-25	67	122	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-22	99	122	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
DGQKHQATIS LQTSLPEYNA RFELGFGQPM ICTKYPYVDQ RYGVFSYGPQ ISGRIMLPLN 60 LTTDDGPIYV NAKQYHGIIR RRQSRAKAAV LENRLPRTRK AYMHESRHLH ALRRPRGCGG 120 RFLNTKNLDN VKGGTEAKKV GDGQLSQPSG SQSSEVLQSD SGTLNSSKEI NGSGSNISGS 180 EVTSMYSRGD LGHLPISHLG RAIHSLSDMM DSNRGIVMPT KWIAAGDTCC NLKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-18	65	130	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015870537.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015900395.1	1e-174	nuclear transcription factor Y subunit A-10-like
Refseq	XP_024922883.1	1e-174	nuclear transcription factor Y subunit A-10-like
Swissprot	Q9M9X4	2e-62	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A2N9IMA4	1e-123	A0A2N9IMA4_FAGSY; Uncharacterized protein
STRING	XP_008350234.1	1e-125	(Malus domestica)
STRING	XP_008387119.1	1e-124	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	1e-52	nuclear factor Y, subunit A2

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]