PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870547.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 212aa    MW: 24407 Da    PI: 10.8739
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-0784131448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E   lvd++ ++G g+W+ I r +      Rt+ +++++w+++l
   XP_015870547.1  84 WTLTEVMNLVDGISEYGVGRWTDIKRLLFaasAYRTPIDLRDKWRNLL 131
                      ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-1173135IPR009057Homeodomain-like
PROSITE profilePS5129413.09376135IPR017930Myb domain
SuperFamilySSF466894.41E-1678163IPR009057Homeodomain-like
SMARTSM007175.8E-780133IPR001005SANT/Myb domain
CDDcd116603.72E-1782132No hitNo description
PfamPF002491.4E-584131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRSHGDLHNV RPKTLSAVSE EELLSGTKIQ EVPLVRGKRG RPKKHVSVPQ IEPDEEHFTS  60
ESEDDSVTKR RCKSHDRRKH QRMWTLTEVM NLVDGISEYG VGRWTDIKRL LFAASAYRTP  120
IDLRDKWRNL LRASCAHKLK KKEMEERQGH AVRPLPKSLL RRVRELAKIH PYPRERGVKS  180
IGEDDPSTLP TSSKGAPLSV GRKNNVRRKN CT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870547.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869840.21e-154uncharacterized protein LOC107407122
RefseqXP_015869952.11e-153uncharacterized protein LOC107407213
RefseqXP_015872539.21e-155uncharacterized protein LOC107409627, partial
TrEMBLA0A2N9EJ972e-75A0A2N9EJ97_FAGSY; Uncharacterized protein
STRINGXP_010107511.13e-75(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-25TRF-like 6