PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870620.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 145aa    MW: 16296.3 Da    PI: 5.0506
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870620.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.52.6e-161259148
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    ++ien+  r v fskRrng++KKA+ LS L + ++av+++s+ g  y+
  XP_015870620.1 12 EKIENEQYRLVRFSKRRNGLFKKAQKLSSLAGCRIAVLVISEAGVPYT 59
                    57****************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.979464IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-16463IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-18571IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-12626IPR002100Transcription factor, MADS-box
PfamPF003192.4E-171359IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-122641IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-124162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MGLGKRKIIS MEKIENEQYR LVRFSKRRNG LFKKAQKLSS LAGCRIAVLV ISEAGVPYTH  60
GSPSFDDVVR DSLISTNSDS EQSSSGSDNN NDDADHSSLM NVDNIDDCKS IEEMIELKSQ  120
LEERLEMVNC RVRATEFEFV RGLFA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870620.11e-102agamous-like MADS-box protein AGL29
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1648159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.11e-16AGAMOUS-like 102