PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015870681.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 308aa    MW: 35040.5 Da    PI: 9.4704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015870681.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.6e-082873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT eE +++ +a +++ ++   +W ++a++++ g+t  ++   ++ 
   XP_015870681.1 28 KWTHEENKQFENALALYDKDtpdRWLKVAAMIP-GKTVGDVMKQYRE 73
                     8********************************.****999998875 PP
2Myb_DNA-binding47.25.1e-15135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_015870681.1 135 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 179
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-42274IPR009057Homeodomain-like
PROSITE profilePS512939.292479IPR017884SANT domain
SMARTSM007175.8E-92577IPR001005SANT/Myb domain
CDDcd001672.42E-72874No hitNo description
PfamPF002495.8E-72873IPR001005SANT/Myb domain
SuperFamilySSF466892.3E-112881IPR009057Homeodomain-like
PROSITE profilePS5129420.486128184IPR017930Myb domain
SuperFamilySSF466891.94E-17129183IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17131183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.8E-13132179IPR009057Homeodomain-like
SMARTSM007172.1E-13132182IPR001005SANT/Myb domain
CDDcd001673.84E-11135180No hitNo description
PfamPF002492.0E-12135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MYRGIEVLSP ASYLQNSNWL FQESKEAKWT HEENKQFENA LALYDKDTPD RWLKVAAMIP  60
GKTVGDVMKQ YRELEEDVSD IEAGLIPIPG YSSNSFTLEW ANNQGFDGLR PYYSVSGKRG  120
TSTRPSEQER KKGVPWTEEE HRQFLMGLKK YGKGDWRNIS RNFVTTRTPT QVASHAQKYF  180
IRQLTGGKDK RRSSIHDITT VNVPDTKSPP CHTKKPPSPA HSAMVMQPQQ HPKNISAMVK  240
QQYDWKSPNE GMPMVFNPTI GNTFMGPFCG ITSYEPKLEA QNFLGSNFHG SQLGSYGTIL  300
QMQSLQHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1529931175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015870681.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870681.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-113DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2P5CRL90.0A0A2P5CRL9_TREOI; GAMYB transcription factor
STRINGXP_008239581.11e-179(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-126MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]