PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015870829.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

HB-other

Protein Properties

Length: 519aa MW: 58616.9 Da PI: 7.3301

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015870829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.2e-19	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t+ q+ +Le+++++++yp++e++ LA++lgLte+q++ WF+ rR k+kk XP_015870829.1 20 KKRRLKTPGQVMALEKFYNEHKYPTEEMKSALAEELGLTEKQISGWFCHRRLKDKK 75 89****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-21	2	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.941	16	76	IPR001356	Homeobox domain
SMART	SM00389	8.9E-19	18	80	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.03E-17	18	83	IPR009057	Homeodomain-like
Pfam	PF00046	2.5E-16	20	75	IPR001356	Homeobox domain
CDD	cd00086	3.03E-17	20	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MEELSEAHSE DNKVSQDNNK KRRLKTPGQV MALEKFYNEH KYPTEEMKSA LAEELGLTEK 60 QISGWFCHRR LKDKKLLRDE KFTNGRQDRS SGIIQDRGSG LGQDSCGSTK NAEYRHVDPR 120 EVESRRLYGH DFPTAELSHD QRSHYTERVS GVDNTSSESS SSLQDRLFSQ SDDPYDMETS 180 RYLKHDGVIA GANPKVSRNM GYKPSGYLKV KGEIENAAVT AVKRQLGRHY REDGPPLAVE 240 FEPLPPGAFE SPGDPGHERY YVENSVLPDS PDISGVKRQP SPSTRYEVYN SKVSSKDSYV 300 HEAPMMHVFE GQEIKSGNQS RKKSTYLNHT SSLPGRNSTL NTYDESGYNR NSRMSSKHGV 360 EGMISDSALK HHGQYSGKIS REQSVPWLDE DNNTSPKILQ RSEYSKLKPS VSKRYGHEMF 420 DMKDRRQSKI MAKAQEDIYN EEAKATKEKC SPVKVKMKPT NEMMAGKKVM VDCSQRDYGT 480 NSSFAPLPPR SHLVIGSTME MPSSFSEDDE TAETSSSVD

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MEELSEAHSE DNKVSQDNNK KRRLKTPGQV MALEKFYNEH KYPTEEMKSA LAEELGLTEK  60
QISGWFCHRR LKDKKLLRDE KFTNGRQDRS SGIIQDRGSG LGQDSCGSTK NAEYRHVDPR  120
EVESRRLYGH DFPTAELSHD QRSHYTERVS GVDNTSSESS SSLQDRLFSQ SDDPYDMETS  180
RYLKHDGVIA GANPKVSRNM GYKPSGYLKV KGEIENAAVT AVKRQLGRHY REDGPPLAVE  240
FEPLPPGAFE SPGDPGHERY YVENSVLPDS PDISGVKRQP SPSTRYEVYN SKVSSKDSYV  300
HEAPMMHVFE GQEIKSGNQS RKKSTYLNHT SSLPGRNSTL NTYDESGYNR NSRMSSKHGV  360
EGMISDSALK HHGQYSGKIS REQSVPWLDE DNNTSPKILQ RSEYSKLKPS VSKRYGHEMF  420
DMKDRRQSKI MAKAQEDIYN EEAKATKEKC SPVKVKMKPT NEMMAGKKVM VDCSQRDYGT  480
NSSFAPLPPR SHLVIGSTME MPSSFSEDDE TAETSSSVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	24	KKRRLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015870829.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015870829.1	0.0	homeobox-DDT domain protein RLT1
TrEMBL	A0A2P5FIL4	0.0	A0A2P5FIL4_TREOI; Octamer-binding transcription factor
STRING	XP_008227678.1	0.0	(Prunus mume)
STRING	XP_010106869.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	3e-80	HB-other family protein